SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '1bdy'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)

Filter list by:

	DrReposER ID / Desc.	Hit PDBID	Hit Macromolecule	Res. Matches	Interface	HETATM	RMSD	Dali Z-score	Seq. Identity (%)
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	3KEE_A_30BA500_1 (GENOME POLYPROTEIN)	1bdy	PROTEIN KINASE C (Rattus norvegicus)	5 / 12	PHE A 27 ARG A 75 ALA A 76 ALA A 77 ASP A 79	None	0.95A	3keeA-1bdyA: undetectable	3keeA-1bdyA: 22.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	3KEE_C_30BC500_1 (GENOME POLYPROTEIN)	1bdy	PROTEIN KINASE C (Rattus norvegicus)	5 / 12	PHE A 27 ARG A 75 ALA A 76 ALA A 77 ASP A 79	None	0.91A	3keeC-1bdyA: undetectable	3keeC-1bdyA: 22.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	4M6T_A_SAMA201_0 (RNA POLYMERASE II-ASSOCIATED FACTOR 1 HOMOLOG, LINKER, RNA POLYMERASE-ASSOCIATE D PROTEIN LEO1)	1bdy	PROTEIN KINASE C (Rattus norvegicus)	4 / 4	ILE A 63 VAL A 90 VAL A 88 ARG A 67	None	1.05A	4m6tA-1bdyA: undetectable	4m6tA-1bdyA: 15.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	5ZVG_A_SAMA401_0 (389AA LONG HYPOTHETICAL NUCLEOLAR PROTEIN)	1bdy	PROTEIN KINASE C (Rattus norvegicus)	5 / 12	PRO A 53 ASP A 79 ALA A 76 ARG A 75 PRO A 26	None	1.30A	5zvgA-1bdyA: undetectable	5zvgA-1bdyA: 15.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	5ZVG_B_SAMB401_0 (389AA LONG HYPOTHETICAL NUCLEOLAR PROTEIN)	1bdy	PROTEIN KINASE C (Rattus norvegicus)	5 / 12	PRO A 53 ASP A 79 ALA A 76 ARG A 75 PRO A 26	None	1.30A	5zvgB-1bdyA: undetectable	5zvgB-1bdyA: 15.26

[["DrReposER ID","Desc.","Hit PDB","Hit molecule","Hit organism","Res. no.","Interface","HETATM","RMSD","Z-score","Seq ID"],["3KEE_A_30BA500_1","GENOME POLYPROTEIN","1bdy","PROTEIN KINASE C","Rattus norvegicus",5,"PHE A  27;ARG A  75;ALA A  76;ALA A  77;ASP A  79","None","0.95A","3keeA-1bdyA:undetectable","3keeA-1bdyA:22.47"],["3KEE_C_30BC500_1","GENOME POLYPROTEIN","1bdy","PROTEIN KINASE C","Rattus norvegicus",5,"PHE A  27;ARG A  75;ALA A  76;ALA A  77;ASP A  79","None","0.91A","3keeC-1bdyA:undetectable","3keeC-1bdyA:22.47"],["4M6T_A_SAMA201_0","RNA POLYMERASE II-ASSOCIATED FACTOR 1 HOMOLOG, LINKER, RNA POLYMERASE-ASSOCIATED PROTEIN LEO1","1bdy","PROTEIN KINASE C","Rattus norvegicus",4,"ILE A  63;VAL A  90;VAL A  88;ARG A  67","None","1.05A","4m6tA-1bdyA:undetectable","4m6tA-1bdyA:15.96"],["5ZVG_A_SAMA401_0","389AA LONG HYPOTHETICAL NUCLEOLAR PROTEIN","1bdy","PROTEIN KINASE C","Rattus norvegicus",5,"PRO A  53;ASP A  79;ALA A  76;ARG A  75;PRO A  26","None","1.30A","5zvgA-1bdyA:undetectable","5zvgA-1bdyA:15.26"],["5ZVG_B_SAMB401_0","389AA LONG HYPOTHETICAL NUCLEOLAR PROTEIN","1bdy","PROTEIN KINASE C","Rattus norvegicus",5,"PRO A  53;ASP A  79;ALA A  76;ARG A  75;PRO A  26","None","1.30A","5zvgB-1bdyA:undetectable","5zvgB-1bdyA:15.26"]]