SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '1by8'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1STF_E_CCSE25_0
(PAPAIN
STEFIN B (CYSTATIN
B))		 1by8 PROTEIN
(PROCATHEPSIN K)
(Homo
sapiens) 		9 / 10 GLN A 118
GLY A 122
SER A 123
TRP A 125
PHE A 127
SER A 128
HIS A 261
ALA A 262
GLY A  77
 None
 0.70A 1stfE-1by8A:
19.6
1stfI-1by8A:
0.0		 1stfE-1by8A:
43.61
1stfI-1by8A:
15.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3AI8_A_HNQA255_1
(CATHEPSIN B)		 1by8 PROTEIN
(PROCATHEPSIN K)
(Homo
sapiens) 		4 / 7 GLN A 118
GLY A 122
HIS A 261
TRP A 283
 None
 0.43A 3ai8A-1by8A:
24.6		 3ai8A-1by8A:
23.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ELZ_A_CHDA152_0
(ILEAL BILE
ACID-BINDING PROTEIN)		 1by8 PROTEIN
(PROCATHEPSIN K)
(Homo
sapiens) 		3 / 3 VAL A  71
LYS A  74
HIS A  18
 None
 0.77A 3elzA-1by8A:
0.0		 3elzA-1by8A:
16.50
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3HEC_A_STIA1_2
(MITOGEN-ACTIVATED
PROTEIN KINASE 14)		 1by8 PROTEIN
(PROCATHEPSIN K)
(Homo
sapiens) 		4 / 4 LEU A  58
MET A  66
ILE A 279
ASP A 235
 None
 1.49A 3hecA-1by8A:
undetectable		 3hecA-1by8A:
20.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3MSS_B_STIB1_2
(TYROSINE-PROTEIN
KINASE ABL1)		 1by8 PROTEIN
(PROCATHEPSIN K)
(Homo
sapiens) 		4 / 7 TYR A 249
VAL A 224
VAL A 263
ILE A 278
 None
 1.06A 3mssB-1by8A:
undetectable		 3mssB-1by8A:
23.16
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4EMA_A_BRLA601_2
(PEROXISOME
PROLIFERATOR-ACTIVAT
ED RECEPTOR GAMMA)		 1by8 PROTEIN
(PROCATHEPSIN K)
(Homo
sapiens) 		3 / 3 PHE A 127
VAL A 266
ILE A 279
 None
 0.55A 4emaA-1by8A:
0.0		 4emaA-1by8A:
21.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4NKX_B_STRB601_1
(STEROID
17-ALPHA-HYDROXYLASE
/17,20 LYASE)		 1by8 PROTEIN
(PROCATHEPSIN K)
(Homo
sapiens) 		6 / 12 ALA A 223
ILE A 279
GLY A 267
ALA A 306
ILE A 212
VAL A 232
 None
 1.25A 4nkxB-1by8A:
0.0		 4nkxB-1by8A:
19.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4NKX_D_STRD601_1
(STEROID
17-ALPHA-HYDROXYLASE
/17,20 LYASE)		 1by8 PROTEIN
(PROCATHEPSIN K)
(Homo
sapiens) 		5 / 12 ALA A 223
GLY A 267
ALA A 306
ILE A 212
VAL A 232
 None
 0.93A 4nkxD-1by8A:
undetectable		 4nkxD-1by8A:
19.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4R38_B_RBFB201_2
(BLUE-LIGHT-ACTIVATED
HISTIDINE KINASE 2)		 1by8 PROTEIN
(PROCATHEPSIN K)
(Homo
sapiens) 		5 / 8 THR A 141
LEU A 145
VAL A 130
LEU A 133
MET A 314
 None
 1.32A 4r38B-1by8A:
0.0		 4r38B-1by8A:
17.04
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5HES_A_032A401_1
(MITOGEN-ACTIVATED
PROTEIN KINASE
KINASE KINASE MLT)		 1by8 PROTEIN
(PROCATHEPSIN K)
(Homo
sapiens) 		6 / 12 GLY A 267
VAL A 230
ALA A 309
ILE A  93
ALA A 219
GLY A 208
 None
 1.42A 5hesA-1by8A:
undetectable		 5hesA-1by8A:
20.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5OF1_B_SALB301_1
(SPORE
COAT-ASSOCIATED
PROTEIN N)		 1by8 PROTEIN
(PROCATHEPSIN K)
(Homo
sapiens) 		4 / 5 ALA A 132
VAL A 230
PHE A 171
ILE A 212
 None
 1.05A 5of1B-1by8A:
undetectable		 5of1B-1by8A:
14.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6HUP_B_DZPB502_0
(GAMMA-AMINOBUTYRIC
ACID RECEPTOR
SUBUNIT
ALPHA-1,GAMMA-AMINOB
UTYRIC ACID RECEPTOR
SUBUNIT ALPHA-1
GAMMA-AMINOBUTYRIC
ACID RECEPTOR
SUBUNIT BETA-3)		 1by8 PROTEIN
(PROCATHEPSIN K)
(Homo
sapiens) 		5 / 11 ILE A  42
LEU A  39
MET A  66
THR A  67
LEU A  63
 None
 1.19A 6hupA-1by8A:
undetectable
6hupB-1by8A:
0.0		 6hupA-1by8A:
13.67
6hupB-1by8A:
12.74