SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '1cqd'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)

Filter list by:

	DrReposER ID / Desc.	Hit PDBID	Hit Macromolecule	Res. Matches	Interface	HETATM	RMSD	Dali Z-score	Seq. Identity (%)
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	1C4D_B_DVAB6_0 (GRAMICIDIN A)	1cqd	PROTEIN (PROTEASE II) (Zingiber officinale)	3 / 3	TRP A 9 ALA A 35 VAL A 166	None	0.94A	1c4dA-1cqdA: undetectable 1c4dB-1cqdA: undetectable	1c4dA-1cqdA: 11.49 1c4dB-1cqdA: 11.49
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.	1STF_E_CCSE25_0 (PAPAIN STEFIN B (CYSTATIN B))	1cqd	PROTEIN (PROTEASE II) (Zingiber officinale)	7 / 10	GLN A 21 GLY A 25 SER A 26 PHE A 30 SER A 31 ALA A 162 GLY A 67	THJ A 800 (-3.2A) THJ A 800 (-3.1A) None None None None THJ A 800 ( 4.6A)	1.17A	1stfE-1cqdA: 37.6 1stfI-1cqdA: 0.9	1stfE-1cqdA: 48.20 1stfI-1cqdA: 19.35
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.	1STF_E_CCSE25_0 (PAPAIN STEFIN B (CYSTATIN B))	1cqd	PROTEIN (PROTEASE II) (Zingiber officinale)	8 / 10	GLN A 21 GLY A 25 SER A 26 TRP A 28 PHE A 30 SER A 31 HIS A 161 ALA A 162	THJ A 800 (-3.2A) THJ A 800 (-3.1A) None None None None THJ A 800 ( 3.9A) None	0.33A	1stfE-1cqdA: 37.6 1stfI-1cqdA: 0.9	1stfE-1cqdA: 48.20 1stfI-1cqdA: 19.35
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.	3AI8_A_HNQA255_1 (CATHEPSIN B)	1cqd	PROTEIN (PROTEASE II) (Zingiber officinale)	4 / 7	GLN A 21 GLY A 25 HIS A 161 TRP A 183	THJ A 800 (-3.2A) THJ A 800 (-3.1A) THJ A 800 ( 3.9A) None	0.37A	3ai8A-1cqdA: 27.5	3ai8A-1cqdA: 31.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	4KIC_A_SAMA401_0 (METHYLTRANSFERASE MPPJ)	1cqd	PROTEIN (PROTEASE II) (Zingiber officinale)	5 / 12	GLY A 64 GLY A 25 ARG A 66 ALA A 29 ASP A 57	None THJ A 800 (-3.1A) None None None	1.09A	4kicA-1cqdA: undetectable	4kicA-1cqdA: 19.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	5UC1_A_486A801_2 (GLUCOCORTICOID RECEPTOR)	1cqd	PROTEIN (PROTEASE II) (Zingiber officinale)	3 / 3	TRP A 28 MET A 70 ASN A 71	None	1.29A	5uc1B-1cqdA: 0.0	5uc1B-1cqdA: 16.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	5UC1_B_486B801_1 (GLUCOCORTICOID RECEPTOR)	1cqd	PROTEIN (PROTEASE II) (Zingiber officinale)	3 / 3	TRP A 28 MET A 70 ASN A 71	None	1.28A	5uc1A-1cqdA: 0.0	5uc1A-1cqdA: 16.67

[["DrReposER ID","Desc.","Hit PDB","Hit molecule","Hit organism","Res. no.","Interface","HETATM","RMSD","Z-score","Seq ID"],["1C4D_B_DVAB6_0","GRAMICIDIN A","1cqd","PROTEIN (PROTEASE II)","Zingiber officinale",3,"TRP A   9;ALA A  35;VAL A 166","None","0.94A","1c4dA-1cqdA:undetectable;1c4dB-1cqdA:undetectable","1c4dA-1cqdA:11.49;1c4dB-1cqdA:11.49"],["1STF_E_CCSE25_0","PAPAIN;STEFIN B (CYSTATIN B)","1cqd","PROTEIN (PROTEASE II)","Zingiber officinale",7,"GLN A  21;GLY A  25;SER A  26;PHE A  30;SER A  31;ALA A 162;GLY A  67","THJ A 800 (-3.2A);THJ A 800 (-3.1A);None;None;None;None;THJ A 800 ( 4.6A)","1.17A","1stfE-1cqdA:37.6;1stfI-1cqdA:0.9","1stfE-1cqdA:48.20;1stfI-1cqdA:19.35"],["1STF_E_CCSE25_0","PAPAIN;STEFIN B (CYSTATIN B)","1cqd","PROTEIN (PROTEASE II)","Zingiber officinale",8,"GLN A  21;GLY A  25;SER A  26;TRP A  28;PHE A  30;SER A  31;HIS A 161;ALA A 162","THJ A 800 (-3.2A);THJ A 800 (-3.1A);None;None;None;None;THJ A 800 ( 3.9A);None","0.33A","1stfE-1cqdA:37.6;1stfI-1cqdA:0.9","1stfE-1cqdA:48.20;1stfI-1cqdA:19.35"],["3AI8_A_HNQA255_1","CATHEPSIN B","1cqd","PROTEIN (PROTEASE II)","Zingiber officinale",4,"GLN A  21;GLY A  25;HIS A 161;TRP A 183","THJ A 800 (-3.2A);THJ A 800 (-3.1A);THJ A 800 ( 3.9A);None","0.37A","3ai8A-1cqdA:27.5","3ai8A-1cqdA:31.11"],["4KIC_A_SAMA401_0","METHYLTRANSFERASE MPPJ","1cqd","PROTEIN (PROTEASE II)","Zingiber officinale",5,"GLY A  64;GLY A  25;ARG A  66;ALA A  29;ASP A  57","None;THJ A 800 (-3.1A);None;None;None","1.09A","4kicA-1cqdA:undetectable","4kicA-1cqdA:19.37"],["5UC1_A_486A801_2","GLUCOCORTICOID RECEPTOR;GLUCOCORTICOID RECEPTOR","1cqd","PROTEIN (PROTEASE II)","Zingiber officinale",3,"TRP A  28;MET A  70;ASN A  71","None","1.29A","5uc1B-1cqdA:0.0","5uc1B-1cqdA:16.67"],["5UC1_B_486B801_1","GLUCOCORTICOID RECEPTOR;GLUCOCORTICOID RECEPTOR","1cqd","PROTEIN (PROTEASE II)","Zingiber officinale",3,"TRP A  28;MET A  70;ASN A  71","None","1.28A","5uc1A-1cqdA:0.0","5uc1A-1cqdA:16.67"]]