SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '1kbv'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1JHQ_A_NIOA991_1
(NICOTINATE
MONONUCLEOTIDE:5,6-D
IMETHYLBENZIMIDAZOLE
PHOSPHORIBOSYLTRANSF
ERASE)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
5 / 8 THR A  62
GLY A  65
GLY A 150
PHE A  63
ARG A  70
None
1.42A 1jhqA-1kbvA:
undetectable
1jhqA-1kbvA:
23.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1JHV_A_NIOA991_1
(NICOTINATE
MONONUCLEOTIDE:5,6-D
IMETHYLBENZIMIDAZOLE
PHOSPHORIBOSYLTRANSF
ERASE)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
5 / 8 THR A  62
GLY A  65
GLY A 150
PHE A  63
ARG A  70
None
1.44A 1jhvA-1kbvA:
undetectable
1jhvA-1kbvA:
23.64
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1OE1_A_CUA501_0
(DISSIMILATORY
COPPER-CONTAINING
NITRITE REDUCTASE)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
4 / 4 HIS A  94
CYH A 135
HIS A 143
MET A 148
CU  A 501 (-3.1A)
CU  A 501 (-2.2A)
CU  A 501 (-3.1A)
CU  A 501 (-2.7A)
0.33A 1oe1A-1kbvA:
41.3
1oe1A-1kbvA:
38.46
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1OE1_A_CUA502_0
(DISSIMILATORY
COPPER-CONTAINING
NITRITE REDUCTASE)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
3 / 3 ASP A  97
HIS A  99
HIS A 134
NO2  A2504 (-2.9A)
CU  A 502 ( 3.4A)
CU  A 502 ( 3.3A)
0.14A 1oe1A-1kbvA:
41.3
1oe1A-1kbvA:
38.46
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1OE2_A_CUA501_0
(DISSIMILATORY
COPPER-CONTAINING
NITRITE REDUCTASE)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
4 / 5 HIS A  94
CYH A 135
HIS A 143
MET A 148
CU  A 501 (-3.1A)
CU  A 501 (-2.2A)
CU  A 501 (-3.1A)
CU  A 501 (-2.7A)
0.33A 1oe2A-1kbvA:
41.2
1oe2A-1kbvA:
38.18
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1OE3_A_CUA501_0
(DISSIMILATORY
COPPER-CONTAINING
NITRITE REDUCTASE)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
4 / 4 HIS A  94
CYH A 135
HIS A 143
MET A 148
CU  A 501 (-3.1A)
CU  A 501 (-2.2A)
CU  A 501 (-3.1A)
CU  A 501 (-2.7A)
0.32A 1oe3A-1kbvA:
40.9
1oe3A-1kbvA:
38.46
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1OE3_A_CUA502_0
(DISSIMILATORY
COPPER-CONTAINING
NITRITE REDUCTASE)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
3 / 3 ASP A  97
HIS A  99
HIS A 134
NO2  A2504 (-2.9A)
CU  A 502 ( 3.4A)
CU  A 502 ( 3.3A)
0.15A 1oe3A-1kbvA:
40.9
1oe3A-1kbvA:
38.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1RUK_H_BEZH601_0
(IMMUNOGLOBULIN
IGG2A, HEAVY CHAIN
IMMUNOGLOBULIN
IGG2A, LIGHT CHAIN)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
4 / 8 ALA A  24
ASN A 204
GLY A 150
GLY A 229
None
0.82A 1rukH-1kbvA:
2.1
1rukL-1kbvA:
2.3
1rukH-1kbvA:
18.07
1rukL-1kbvA:
22.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2FL5_B_RBFB202_1
(IMMUNOGLOBULIN IGG1
LAMBDA LIGHT CHAIN
IMMUNOGLOBULIN IGG1
HEAVY CHAIN)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
5 / 11 GLY A 150
TYR A 149
PRO A  68
ASN A 204
TYR A 168
None
1.46A 2fl5A-1kbvA:
1.6
2fl5B-1kbvA:
undetectable
2fl5F-1kbvA:
1.0
2fl5A-1kbvA:
20.85
2fl5B-1kbvA:
21.50
2fl5F-1kbvA:
21.50
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2FQD_A_CUA601_0
(BLUE COPPER OXIDASE
CUEO)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
4 / 4 HIS A  94
CYH A 135
HIS A 143
MET A 148
CU  A 501 (-3.1A)
CU  A 501 (-2.2A)
CU  A 501 (-3.1A)
CU  A 501 (-2.7A)
0.77A 2fqdA-1kbvA:
21.7
2fqdA-1kbvA:
22.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2FQE_A_CUA601_0
(BLUE COPPER OXIDASE
CUEO)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
4 / 4 HIS A  94
CYH A 135
HIS A 143
MET A 148
CU  A 501 (-3.1A)
CU  A 501 (-2.2A)
CU  A 501 (-3.1A)
CU  A 501 (-2.7A)
0.75A 2fqeA-1kbvA:
21.8
2fqeA-1kbvA:
22.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2FQF_A_CUA601_0
(BLUE COPPER OXIDASE
CUEO)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
4 / 4 HIS A  94
CYH A 135
HIS A 143
MET A 148
CU  A 501 (-3.1A)
CU  A 501 (-2.2A)
CU  A 501 (-3.1A)
CU  A 501 (-2.7A)
0.77A 2fqfA-1kbvA:
21.8
2fqfA-1kbvA:
22.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2FQG_A_CUA601_0
(BLUE COPPER OXIDASE
CUEO)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
4 / 4 HIS A  94
CYH A 135
HIS A 143
MET A 148
CU  A 501 (-3.1A)
CU  A 501 (-2.2A)
CU  A 501 (-3.1A)
CU  A 501 (-2.7A)
0.79A 2fqgA-1kbvA:
21.8
2fqgA-1kbvA:
22.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2JN3_A_JN3A131_2
(FATTY ACID-BINDING
PROTEIN, LIVER)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
4 / 6 LEU A 216
GLN A 171
ILE A 169
PHE A 167
None
1.13A 2jn3A-1kbvA:
0.0
2jn3A-1kbvA:
19.14
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2XXG_A_CUA1337_0
(DISSIMILATORY
COPPER-CONTAINING
NITRITE REDUCTASE)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
4 / 4 HIS A  94
CYH A 135
HIS A 143
MET A 148
CU  A 501 (-3.1A)
CU  A 501 (-2.2A)
CU  A 501 (-3.1A)
CU  A 501 (-2.7A)
0.36A 2xxgA-1kbvA:
41.1
2xxgA-1kbvA:
38.18
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2XXG_A_CUA1338_0
(DISSIMILATORY
COPPER-CONTAINING
NITRITE REDUCTASE)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
3 / 3 ASP A  97
HIS A  99
HIS A 134
NO2  A2504 (-2.9A)
CU  A 502 ( 3.4A)
CU  A 502 ( 3.3A)
0.12A 2xxgA-1kbvA:
41.1
2xxgA-1kbvA:
38.18
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2XXG_C_CUC1338_0
(DISSIMILATORY
COPPER-CONTAINING
NITRITE REDUCTASE)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
4 / 5 HIS A  94
CYH A 135
HIS A 143
MET A 148
CU  A 501 (-3.1A)
CU  A 501 (-2.2A)
CU  A 501 (-3.1A)
CU  A 501 (-2.7A)
0.35A 2xxgC-1kbvA:
41.1
2xxgC-1kbvA:
38.18
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2XXG_C_CUC1339_0
(DISSIMILATORY
COPPER-CONTAINING
NITRITE REDUCTASE)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
3 / 3 ASP A  97
HIS A  99
HIS A 134
NO2  A2504 (-2.9A)
CU  A 502 ( 3.4A)
CU  A 502 ( 3.3A)
0.08A 2xxgC-1kbvA:
41.1
2xxgC-1kbvA:
38.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3KU1_A_SAMA226_0
(SAM-DEPENDENT
METHYLTRANSFERASE)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
5 / 12 VAL A 266
GLY A 269
GLY A 129
LEU A 151
ILE A 132
None
0.86A 3ku1A-1kbvA:
undetectable
3ku1A-1kbvA:
22.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3KU1_C_SAMC226_0
(SAM-DEPENDENT
METHYLTRANSFERASE)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
5 / 12 VAL A 266
GLY A 269
GLY A 129
LEU A 151
ILE A 132
None
0.87A 3ku1C-1kbvA:
undetectable
3ku1C-1kbvA:
22.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ME6_C_CGEC501_1
(CYTOCHROME P450 2B4)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
5 / 9 VAL A  41
ILE A  72
PHE A  98
ALA A 101
VAL A  74
None
1.21A 3me6C-1kbvA:
0.0
3me6C-1kbvA:
20.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ME6_D_CGED501_1
(CYTOCHROME P450 2B4)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
5 / 9 VAL A  41
ILE A  72
PHE A  98
ALA A 101
VAL A  74
None
1.27A 3me6D-1kbvA:
0.0
3me6D-1kbvA:
20.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3SJ0_X_DXCX75_0
(CYTOCHROME C7)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
4 / 7 ILE A 144
LYS A  48
PHE A 174
GLY A 205
None
1.24A 3sj0X-1kbvA:
undetectable
3sj0X-1kbvA:
15.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3TKG_C_ROCC901_1
(PROTEASE)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
5 / 12 GLY A 229
ILE A 152
THR A  22
PRO A  28
VAL A  27
None
1.01A 3tkgC-1kbvA:
undetectable
3tkgC-1kbvA:
14.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4EF3_A_CUA1001_0
(BLUE COPPER OXIDASE
CUEO)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
4 / 4 HIS A  94
CYH A 135
HIS A 143
MET A 148
CU  A 501 (-3.1A)
CU  A 501 (-2.2A)
CU  A 501 (-3.1A)
CU  A 501 (-2.7A)
0.78A 4ef3A-1kbvA:
21.6
4ef3A-1kbvA:
22.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4I1R_A_LZUA801_1
(MUCOSA-ASSOCIATED
LYMPHOID TISSUE
LYMPHOMA
TRANSLOCATION
PROTEIN 1)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
5 / 12 VAL A 201
ALA A 193
GLU A 196
LEU A 235
ARG A 293
None
1.16A 4i1rA-1kbvA:
undetectable
4i1rA-1kbvA:
20.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5CLT_A_ACRA1000_1
(1,4-ALPHA-GLUCAN-BRA
NCHING ENZYME)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
5 / 10 GLU A 166
PRO A 128
GLY A 129
GLU A 155
ARG A  73
None
1.42A 5cltA-1kbvA:
1.3
5cltA-1kbvA:
17.16
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5CLT_C_ACRC1000_1
(1,4-ALPHA-GLUCAN-BRA
NCHING ENZYME)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
5 / 10 GLU A 166
PRO A 128
GLY A 129
GLU A 155
ARG A  73
None
1.38A 5cltC-1kbvA:
0.8
5cltC-1kbvA:
17.16
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5E26_A_PAUA602_0
(PANTOTHENATE KINASE
2, MITOCHONDRIAL)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
4 / 7 GLY A 269
SER A 271
GLY A 229
TYR A 131
None
0.85A 5e26A-1kbvA:
0.0
5e26B-1kbvA:
undetectable
5e26A-1kbvA:
23.96
5e26B-1kbvA:
23.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5E26_B_PAUB601_0
(PANTOTHENATE KINASE
2, MITOCHONDRIAL)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
4 / 7 TYR A 131
GLY A 269
SER A 271
GLY A 229
None
0.82A 5e26A-1kbvA:
0.0
5e26B-1kbvA:
undetectable
5e26A-1kbvA:
23.96
5e26B-1kbvA:
23.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5E26_C_PAUC602_0
(PANTOTHENATE KINASE
2, MITOCHONDRIAL)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
4 / 7 GLY A 269
SER A 271
GLY A 229
TYR A 131
None
0.83A 5e26C-1kbvA:
undetectable
5e26D-1kbvA:
0.0
5e26C-1kbvA:
23.96
5e26D-1kbvA:
23.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5G5H_A_ACTA1229_0
(PUTATIVE XANTHINE
DEHYDROGENASE YAGT
IRON-SULFUR-BINDING
SUBUNIT)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
4 / 4 VAL A  41
GLU A  83
THR A 120
GLU A  81
None
1.46A 5g5hA-1kbvA:
0.0
5g5hA-1kbvA:
22.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5IWU_A_ACTA402_0
(MACROLIDE
2'-PHOSPHOTRANSFERAS
E II)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
4 / 6 PHE A 123
VAL A  80
MET A  43
ILE A  72
None
1.31A 5iwuA-1kbvA:
undetectable
5iwuA-1kbvA:
21.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5N9X_A_THRA601_0
(ADENYLATION DOMAIN)
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
4 / 7 PHE A 121
PHE A 123
GLY A 106
GLY A 103
None
1.01A 5n9xA-1kbvA:
undetectable
5n9xA-1kbvA:
20.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5XIQ_D_HFGD1002_1
(PROLYL-TRNA
SYNTHETASE (PRORS))
1kbv MAJOR OUTER MEMBRANE
PROTEIN PAN 1

(Neisseria
gonorrhoeae)
3 / 3 THR A  91
GLU A  47
HIS A 143
None
None
CU  A 501 (-3.1A)
0.90A 5xiqD-1kbvA:
undetectable
5xiqD-1kbvA:
20.47