SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '1lmo'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1N4F_A_ASRA141_0
(LYSOZYME C)		 1lmo LYSOZYME
(Oncorhynchus
mykiss) 		4 / 6 ASP A  66
GLY A  67
THR A  69
PRO A  70
 None
 0.92A 1n4fA-1lmoA:
26.4		 1n4fA-1lmoA:
60.47
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4AGA_A_ACTA1131_0
(LYSOZYME C)		 1lmo LYSOZYME
(Oncorhynchus
mykiss) 		3 / 3 ASN A  46
ASP A  52
ASN A  59
 None
NAG  A 131 ( 4.5A)
NAG  A 131 (-4.1A)
 0.36A 4agaA-1lmoA:
26.1		 4agaA-1lmoA:
60.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4DTA_B_ADNB401_1
(APH(2'')-ID)		 1lmo LYSOZYME
(Oncorhynchus
mykiss) 		4 / 8 SER A  15
ILE A  92
ILE A  55
ASP A  87
 None
 0.95A 4dtaB-1lmoA:
undetectable		 4dtaB-1lmoA:
15.21
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4II8_A_010A210_0
(LYSOZYME C)		 1lmo LYSOZYME
(Oncorhynchus
mykiss) 		6 / 7 GLU A  35
ASP A  52
GLN A  57
ASN A  59
TRP A  63
TRP A 108
 None
NAG  A 131 ( 4.5A)
None
NAG  A 131 (-4.1A)
NAG  A 131 ( 4.1A)
NAG  A 131 (-3.7A)
 0.26A 4ii8A-1lmoA:
26.1		 4ii8A-1lmoA:
60.47
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5DL9_A_ACTA214_0
(LYSOZYME C)		 1lmo LYSOZYME
(Oncorhynchus
mykiss) 		5 / 5 GLU A  35
ASP A  52
TRP A 108
VAL A 109
ALA A 110
 None
NAG  A 131 ( 4.5A)
NAG  A 131 (-3.7A)
None
None
 0.60A 5dl9A-1lmoA:
25.9		 5dl9A-1lmoA:
60.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5VW4_A_NCAA403_0
(FERREDOXIN--NADP
REDUCTASE)		 1lmo LYSOZYME
(Oncorhynchus
mykiss) 		5 / 9 SER A  36
THR A  40
GLY A  54
ALA A  42
LEU A  88
 None
 1.06A 5vw4A-1lmoA:
undetectable		 5vw4A-1lmoA:
20.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5VW9_A_NCAA403_0
(FERREDOXIN--NADP
REDUCTASE)		 1lmo LYSOZYME
(Oncorhynchus
mykiss) 		5 / 8 SER A  36
THR A  40
GLY A  54
ALA A  42
GLU A  35
 None
 1.14A 5vw9A-1lmoA:
undetectable		 5vw9A-1lmoA:
20.21