SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '1nff'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1DBB_H_STRH229_1
(IGG1-KAPPA DB3 FAB
(HEAVY CHAIN)
IGG1-KAPPA DB3 FAB
(LIGHT CHAIN))		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		4 / 8 ASN A  88
GLY A  20
HIS A  59
VAL A  62
 NAD  A1300 (-3.3A)
None
None
NAD  A1300 (-3.5A)
 0.91A 1dbbH-1nffA:
undetectable
1dbbL-1nffA:
undetectable		 1dbbH-1nffA:
22.26
1dbbL-1nffA:
18.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ICR_A_NIOA604_1
(OXYGEN-INSENSITIVE
NAD(P)H
NITROREDUCTASE)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		4 / 5 SER A 140
PHE A 158
GLU A 142
GLY A 146
 NAD  A1300 (-4.3A)
None
None
None
 1.27A 1icrA-1nffA:
0.0
1icrB-1nffA:
0.0		 1icrA-1nffA:
22.26
1icrB-1nffA:
22.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ICR_B_NIOB602_1
(OXYGEN-INSENSITIVE
NAD(P)H
NITROREDUCTASE)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		4 / 5 GLU A 142
GLY A 146
SER A 140
PHE A 158
 None
None
NAD  A1300 (-4.3A)
None
 1.33A 1icrA-1nffA:
0.0
1icrB-1nffA:
0.0		 1icrA-1nffA:
22.26
1icrB-1nffA:
22.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ICV_A_NIOA704_1
(OXYGEN-INSENSITIVE
NAD(P)H
NITROREDUCTASE)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		4 / 4 SER A 140
PHE A 158
GLU A 142
GLY A 146
 NAD  A1300 (-4.3A)
None
None
None
 1.22A 1icvA-1nffA:
0.0
1icvB-1nffA:
0.0		 1icvA-1nffA:
22.26
1icvB-1nffA:
22.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ICV_C_NIOC708_1
(OXYGEN-INSENSITIVE
NAD(P)H
NITROREDUCTASE)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		4 / 5 SER A 140
PHE A 158
GLU A 142
GLY A 146
 NAD  A1300 (-4.3A)
None
None
None
 1.26A 1icvC-1nffA:
undetectable
1icvD-1nffA:
undetectable		 1icvC-1nffA:
22.26
1icvD-1nffA:
22.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ICV_D_NIOD706_1
(OXYGEN-INSENSITIVE
NAD(P)H
NITROREDUCTASE)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		4 / 5 GLU A 142
GLY A 146
SER A 140
PHE A 158
 None
None
NAD  A1300 (-4.3A)
None
 1.27A 1icvC-1nffA:
undetectable
1icvD-1nffA:
undetectable		 1icvC-1nffA:
22.26
1icvD-1nffA:
22.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1KQB_B_BEZB525_0
(OXYGEN-INSENSITIVE
NAD(P)H
NITROREDUCTASE)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		4 / 5 GLU A 142
GLY A 146
SER A 140
PHE A 158
 None
None
NAD  A1300 (-4.3A)
None
 1.32A 1kqbA-1nffA:
undetectable
1kqbB-1nffA:
undetectable		 1kqbA-1nffA:
22.97
1kqbB-1nffA:
22.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1P91_B_SAMB2401_0
(RIBOSOMAL RNA LARGE
SUBUNIT
METHYLTRANSFERASE A)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		5 / 12 ARG A 177
GLY A 175
GLY A 172
ILE A 135
LEU A 215
 None
 0.98A 1p91B-1nffA:
5.0		 1p91B-1nffA:
23.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1U70_A_MTXA187_2
(DIHYDROFOLATE
REDUCTASE)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		4 / 4 SER A 139
ILE A 138
VAL A 234
THR A 201
 None
NAD  A1300 (-4.4A)
None
None
 1.23A 1u70A-1nffA:
1.9		 1u70A-1nffA:
20.07
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1UAY_A_ADNA1001_1
(TYPE II
3-HYDROXYACYL-COA
DEHYDROGENASE)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		7 / 11 GLY A  14
ALA A  16
ASP A  38
ARG A  17
VAL A  62
ALA A  89
VAL A 111
 NAD  A1300 (-3.5A)
NAD  A1300 ( 4.3A)
NAD  A1300 (-2.8A)
NAD  A1300 (-3.7A)
NAD  A1300 (-3.5A)
NAD  A1300 (-3.6A)
NAD  A1300 ( 4.3A)
 1.31A 1uayA-1nffA:
31.3		 1uayA-1nffA:
34.52
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1UAY_A_ADNA1001_1
(TYPE II
3-HYDROXYACYL-COA
DEHYDROGENASE)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		7 / 11 GLY A  14
ALA A  16
ASP A  38
ASP A  61
VAL A  62
ALA A  89
VAL A 111
 NAD  A1300 (-3.5A)
NAD  A1300 ( 4.3A)
NAD  A1300 (-2.8A)
NAD  A1300 (-3.9A)
NAD  A1300 (-3.5A)
NAD  A1300 (-3.6A)
NAD  A1300 ( 4.3A)
 0.43A 1uayA-1nffA:
31.3		 1uayA-1nffA:
34.52
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1UAY_B_ADNB1002_1
(TYPE II
3-HYDROXYACYL-COA
DEHYDROGENASE)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		7 / 10 GLY A  14
ALA A  16
ASP A  38
ASP A  61
VAL A  62
ALA A  89
VAL A 111
 NAD  A1300 (-3.5A)
NAD  A1300 ( 4.3A)
NAD  A1300 (-2.8A)
NAD  A1300 (-3.9A)
NAD  A1300 (-3.5A)
NAD  A1300 (-3.6A)
NAD  A1300 ( 4.3A)
 0.42A 1uayB-1nffA:
31.7		 1uayB-1nffA:
34.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2BM9_E_SAME301_0
(CEPHALOSPORIN
HYDROXYLASE CMCI)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		5 / 12 GLY A  14
ASP A  38
ASP A  61
ASN A  88
ALA A  89
 NAD  A1300 (-3.5A)
NAD  A1300 (-2.8A)
NAD  A1300 (-3.9A)
NAD  A1300 (-3.3A)
NAD  A1300 (-3.6A)
 0.93A 2bm9E-1nffA:
5.7		 2bm9E-1nffA:
22.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2NYU_B_SAMB201_0
(PUTATIVE RIBOSOMAL
RNA
METHYLTRANSFERASE 2)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		5 / 12 GLY A  14
ALA A  16
LEU A  40
VAL A  62
THR A  63
 NAD  A1300 (-3.5A)
NAD  A1300 ( 4.3A)
NAD  A1300 (-3.9A)
NAD  A1300 (-3.5A)
NAD  A1300 ( 4.5A)
 0.87A 2nyuB-1nffA:
9.8		 2nyuB-1nffA:
22.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2W98_B_P1ZB1359_1
(PROSTAGLANDIN
REDUCTASE 2)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		4 / 6 THR A 164
GLU A 231
PHE A 232
ILE A 181
 None
 1.15A 2w98B-1nffA:
8.5		 2w98B-1nffA:
21.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2XRZ_B_ACTB1463_0
(DEOXYRIBODIPYRIMIDIN
E PHOTOLYASE)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		4 / 7 VAL A 239
ILE A 141
GLY A 237
THR A 238
 None
 0.74A 2xrzB-1nffA:
2.9		 2xrzB-1nffA:
20.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3AY0_A_ADNA401_1
(UNCHARACTERIZED
PROTEIN MJ0883)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		5 / 10 ASP A  38
ILE A  39
ALA A  16
ASP A  61
VAL A  62
 NAD  A1300 (-2.8A)
NAD  A1300 (-4.3A)
NAD  A1300 ( 4.3A)
NAD  A1300 (-3.9A)
NAD  A1300 (-3.5A)
 0.97A 3ay0A-1nffA:
6.9		 3ay0A-1nffA:
19.76
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3AY0_B_ADNB402_1
(UNCHARACTERIZED
PROTEIN MJ0883)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		5 / 10 GLY A  15
ASP A  38
ILE A  39
ASP A  61
VAL A  62
 None
NAD  A1300 (-2.8A)
NAD  A1300 (-4.3A)
NAD  A1300 (-3.9A)
NAD  A1300 (-3.5A)
 1.13A 3ay0B-1nffA:
6.9		 3ay0B-1nffA:
19.76
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3H52_A_486A3_1
(GLUCOCORTICOID
RECEPTOR)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		5 / 12 ASN A  87
VAL A 216
ARG A 177
MET A 127
LEU A  82
 None
 1.30A 3h52A-1nffA:
undetectable		 3h52A-1nffA:
20.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3K37_B_BCZB468_1
(NEURAMINIDASE)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		3 / 3 ARG A  17
GLU A  42
TYR A  57
 NAD  A1300 (-3.7A)
None
None
 0.93A 3k37B-1nffA:
0.0		 3k37B-1nffA:
23.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4FP9_C_SAMC401_0
(METHYLTRANSFERASE
NSUN4)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		5 / 12 GLY A 184
ASN A  88
SER A  22
GLY A  14
PRO A 189
 None
NAD  A1300 (-3.3A)
None
NAD  A1300 (-3.5A)
NAD  A1300 (-3.5A)
 1.04A 4fp9C-1nffA:
3.3		 4fp9C-1nffA:
20.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4FZV_A_SAMA401_0
(PUTATIVE
METHYLTRANSFERASE
NSUN4)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		5 / 12 GLY A 184
ASN A  88
SER A  22
GLY A  14
PRO A 189
 None
NAD  A1300 (-3.3A)
None
NAD  A1300 (-3.5A)
NAD  A1300 (-3.5A)
 1.09A 4fzvA-1nffA:
4.2		 4fzvA-1nffA:
20.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4I1R_A_LZUA801_1
(MUCOSA-ASSOCIATED
LYMPHOID TISSUE
LYMPHOMA
TRANSLOCATION
PROTEIN 1)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		5 / 12 VAL A   9
LEU A  11
LYS A  33
VAL A  35
ALA A  71
 None
 1.07A 4i1rA-1nffA:
4.9		 4i1rA-1nffA:
22.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4M48_A_21BA704_1
(TRANSPORTER)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		4 / 8 ASP A  41
TYR A  57
GLY A  14
ALA A  71
 None
None
NAD  A1300 (-3.5A)
None
 0.85A 4m48A-1nffA:
undetectable		 4m48A-1nffA:
20.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4OBW_A_SAMA602_0
(2-METHOXY-6-POLYPREN
YL-1,4-BENZOQUINOL
METHYLASE,
MITOCHONDRIAL)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		5 / 12 ALA A 168
GLY A 229
SER A 180
ILE A 176
GLY A 172
 None
 1.23A 4obwA-1nffA:
7.2		 4obwA-1nffA:
21.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4YB6_A_HISA302_0
(ATP
PHOSPHORIBOSYLTRANSF
ERASE)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		5 / 10 GLY A 162
VAL A 160
HIS A 182
LEU A 144
SER A 180
 None
 1.20A 4yb6A-1nffA:
undetectable
4yb6E-1nffA:
undetectable		 4yb6A-1nffA:
20.13
4yb6E-1nffA:
20.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4YB6_B_HISB302_0
(ATP
PHOSPHORIBOSYLTRANSF
ERASE)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		5 / 10 GLY A 162
VAL A 160
HIS A 182
LEU A 144
SER A 180
 None
 1.19A 4yb6B-1nffA:
0.0
4yb6C-1nffA:
0.0		 4yb6B-1nffA:
20.13
4yb6C-1nffA:
20.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4YB6_C_HISC302_0
(ATP
PHOSPHORIBOSYLTRANSF
ERASE)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		5 / 10 GLY A 162
VAL A 160
HIS A 182
LEU A 144
SER A 180
 None
 1.18A 4yb6C-1nffA:
undetectable
4yb6F-1nffA:
undetectable		 4yb6C-1nffA:
20.13
4yb6F-1nffA:
20.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4YB6_D_HISD302_0
(ATP
PHOSPHORIBOSYLTRANSF
ERASE)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		5 / 10 HIS A 182
LEU A 144
SER A 180
GLY A 162
VAL A 160
 None
 1.17A 4yb6A-1nffA:
undetectable
4yb6D-1nffA:
0.0		 4yb6A-1nffA:
20.13
4yb6D-1nffA:
20.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4YB6_E_HISE302_0
(ATP
PHOSPHORIBOSYLTRANSF
ERASE)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		5 / 10 HIS A 182
LEU A 144
SER A 180
GLY A 162
VAL A 160
 None
 1.20A 4yb6D-1nffA:
0.0
4yb6E-1nffA:
0.0		 4yb6D-1nffA:
20.13
4yb6E-1nffA:
20.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4YB6_F_HISF302_0
(ATP
PHOSPHORIBOSYLTRANSF
ERASE)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		5 / 10 HIS A 182
LEU A 144
SER A 180
GLY A 162
VAL A 160
 None
 1.19A 4yb6B-1nffA:
undetectable
4yb6F-1nffA:
undetectable		 4yb6B-1nffA:
20.13
4yb6F-1nffA:
20.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5JGL_A_SAMA301_0
(UBIE/COQ5 FAMILY
METHYLTRANSFERASE,
PUTATIVE)		 1nff PUTATIVE
OXIDOREDUCTASE
RV2002
(Mycobacterium
tuberculosis) 		5 / 12 SER A 134
ALA A 130
ALA A  75
PHE A  79
GLY A  81
 None
 1.45A 5jglA-1nffA:
7.1		 5jglA-1nffA:
23.90