SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '1qdb'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1DTL_A_BEPA206_1
(CARDIAC TROPONIN C)		 1qdb CYTOCHROME C NITRITE
REDUCTASE
(Sulfurospirillum
deleyianum) 		4 / 8 PRO A 283
GLU A 286
GLU A 254
ARG A 393
 None
None
SO4  A1506 ( 4.2A)
None
 1.23A 1dtlA-1qdbA:
undetectable		 1dtlA-1qdbA:
16.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ZLQ_A_ACTA1502_0
(NICKEL-BINDING
PERIPLASMIC PROTEIN)		 1qdb CYTOCHROME C NITRITE
REDUCTASE
(Sulfurospirillum
deleyianum) 		4 / 5 PRO A 240
GLY A 244
ASN A 243
GLY A 255
 None
 1.16A 1zlqA-1qdbA:
0.0		 1zlqA-1qdbA:
22.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2G72_B_SAMB2002_1
(PHENYLETHANOLAMINE
N-METHYLTRANSFERASE)		 1qdb CYTOCHROME C NITRITE
REDUCTASE
(Sulfurospirillum
deleyianum) 		4 / 7 GLY A 166
TYR A 498
ASN A 169
ASP A 172
 HEM  A 516 (-4.4A)
None
HEM  A 517 ( 4.4A)
None
 0.87A 2g72B-1qdbA:
undetectable		 2g72B-1qdbA:
19.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2OTH_A_NIMA300_1
(PHOSPHOLIPASE A2
VRV-PL-VIIIA)		 1qdb CYTOCHROME C NITRITE
REDUCTASE
(Sulfurospirillum
deleyianum) 		4 / 5 LEU A  76
ALA A  85
ILE A  84
SER A  87
 None
 1.12A 2othA-1qdbA:
undetectable		 2othA-1qdbA:
12.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ROX_A_T44A128_1
(TRANSTHYRETIN)		 1qdb CYTOCHROME C NITRITE
REDUCTASE
(Sulfurospirillum
deleyianum) 		4 / 4 LYS A 454
LEU A  76
ALA A 457
LEU A  82
 None
 1.38A 2roxA-1qdbA:
0.0		 2roxA-1qdbA:
13.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3QL6_A_NIMA614_1
(LACTOPEROXIDASE)		 1qdb CYTOCHROME C NITRITE
REDUCTASE
(Sulfurospirillum
deleyianum) 		4 / 7 GLN A 106
GLU A 480
PHE A 475
PRO A 117
 None
 1.35A 3ql6A-1qdbA:
0.0		 3ql6A-1qdbA:
20.91
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3SUD_B_SUEB1201_1
(NS3 PROTEASE, NS4A
PROTEIN)		 1qdb CYTOCHROME C NITRITE
REDUCTASE
(Sulfurospirillum
deleyianum) 		6 / 12 GLN A 396
PHE A 362
TYR A  95
GLY A 366
ALA A  81
ALA A 457
 None
None
HEM  A 515 (-4.7A)
None
None
None
 1.31A 3sudB-1qdbA:
undetectable		 3sudB-1qdbA:
15.16
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4LNW_A_T3A502_1
(THYROID HORMONE
RECEPTOR ALPHA)		 1qdb CYTOCHROME C NITRITE
REDUCTASE
(Sulfurospirillum
deleyianum) 		4 / 8 ASP A 267
GLN A 281
VAL A 237
THR A 238
 CA  A 520 ( 4.3A)
CA  A 520 ( 3.2A)
HEM  A 515 ( 4.7A)
None
 1.15A 4lnwA-1qdbA:
undetectable		 4lnwA-1qdbA:
20.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4MK4_A_CHDA504_0
(FERROCHELATASE,
MITOCHONDRIAL)		 1qdb CYTOCHROME C NITRITE
REDUCTASE
(Sulfurospirillum
deleyianum) 		4 / 8 ARG A 418
PRO A 283
VAL A 253
GLY A 252
 SO4  A1506 (-3.5A)
None
None
None
 0.89A 4mk4A-1qdbA:
undetectable		 4mk4A-1qdbA:
20.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4PD9_A_ADNA501_2
(NUPC FAMILY PROTEIN)		 1qdb CYTOCHROME C NITRITE
REDUCTASE
(Sulfurospirillum
deleyianum) 		3 / 3 THR A 131
ASN A 186
PHE A 197
 HEM  A 515 ( 4.9A)
None
None
 0.82A 4pd9A-1qdbA:
undetectable		 4pd9A-1qdbA:
20.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4QZT_B_ACTB201_0
(RETINOL-BINDING
PROTEIN 2)		 1qdb CYTOCHROME C NITRITE
REDUCTASE
(Sulfurospirillum
deleyianum) 		4 / 5 TYR A  89
TYR A 260
GLU A 216
GLN A 281
 None
None
CA  A 520 (-2.4A)
CA  A 520 ( 3.2A)
 1.25A 4qztB-1qdbA:
0.0		 4qztB-1qdbA:
13.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4U9U_A_ACTA1502_0
(NA(+)-TRANSLOCATING
NADH-QUINONE
REDUCTASE SUBUNIT F)		 1qdb CYTOCHROME C NITRITE
REDUCTASE
(Sulfurospirillum
deleyianum) 		4 / 5 GLY A 115
ALA A 116
GLY A 123
PRO A 124
 None
 0.86A 4u9uA-1qdbA:
undetectable		 4u9uA-1qdbA:
18.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4U9U_B_ACTB1502_0
(NA(+)-TRANSLOCATING
NADH-QUINONE
REDUCTASE SUBUNIT F)		 1qdb CYTOCHROME C NITRITE
REDUCTASE
(Sulfurospirillum
deleyianum) 		4 / 5 GLY A 115
ALA A 116
GLY A 123
PRO A 124
 None
 0.88A 4u9uB-1qdbA:
undetectable		 4u9uB-1qdbA:
18.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5GWZ_D_010D6_0
(N-[(5-METHYLISOXAZOL
-3-YL)CARBONYL]ALANY
L-L-VALYL-N~1~-((1R,
2Z)-4-(BENZYLOXY)-4-
OXO-1-{[(3R)-2-OXOPY
RROLIDIN-3-YL]METHYL
}BUT-2-ENYL)-L-LEUCI
NAMIDE
PEDV MAIN PROTEASE)		 1qdb CYTOCHROME C NITRITE
REDUCTASE
(Sulfurospirillum
deleyianum) 		3 / 3 MET A 277
HIS A 369
GLY A 395
 None
 0.86A 5gwzB-1qdbA:
undetectable		 5gwzB-1qdbA:
22.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5O4Y_F_CCSF14_0
(PHE-MAA-ASN-PRO-HIS-
LEU-SER-TRP-SER-TRP-
9KK-9KK-ARG-CCS-GLY-
NH2)		 1qdb CYTOCHROME C NITRITE
REDUCTASE
(Sulfurospirillum
deleyianum) 		4 / 6 PHE A  91
TRP A  86
SER A  92
GLY A  88
 SO4  A1501 (-4.6A)
None
None
None
 1.07A 5o4yF-1qdbA:
undetectable		 5o4yF-1qdbA:
2.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6H7U_A_FVTA501_0
(PEPTIDE ABC
TRANSPORTER PERMEASE)		 1qdb CYTOCHROME C NITRITE
REDUCTASE
(Sulfurospirillum
deleyianum) 		4 / 6 VAL A 109
ASN A 110
ASN A 512
ILE A 504
 None
 1.14A 6h7uA-1qdbA:
undetectable		 6h7uA-1qdbA:
21.24