SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '1vdm'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2AOJ_C_FRDC305_2
(POL POLYPROTEIN
PEPTIDE INHIBITOR)		 1vdm PURINE
PHOSPHORIBOSYLTRANSF
ERASE
(Pyrococcus
horikoshii) 		5 / 7 GLY A  49
ILE A  47
PRO A  27
VAL A  87
ILE A  30
 None
 1.49A 2aojB-1vdmA:
undetectable		 2aojB-1vdmA:
22.07
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3V35_A_NTIA317_1
(ALDOSE REDUCTASE)		 1vdm PURINE
PHOSPHORIBOSYLTRANSF
ERASE
(Pyrococcus
horikoshii) 		4 / 8 VAL A   4
TRP A 139
PRO A 123
TRP A 124
 None
 1.32A 3v35A-1vdmA:
undetectable		 3v35A-1vdmA:
19.35