SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '1xkd'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1EII_A_RTLA135_0
(CELLULAR
RETINOL-BINDING
PROTEIN II)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		5 / 12 ALA A  39
PHE A  40
ARG A  42
LEU A 121
LEU A  96
 None
 1.08A 1eiiA-1xkdA:
undetectable		 1eiiA-1xkdA:
13.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ERE_E_ESTE600_1
(ESTROGEN RECEPTOR)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		4 / 8 ALA A 337
LEU A 367
LEU A 366
LEU A  30
 None
 0.97A 1ereE-1xkdA:
undetectable		 1ereE-1xkdA:
19.91
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ERE_F_ESTF600_1
(ESTROGEN RECEPTOR)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		4 / 8 ALA A 337
LEU A 367
LEU A 366
LEU A  30
 None
 0.96A 1ereF-1xkdA:
undetectable		 1ereF-1xkdA:
19.91
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1IBG_H_OBNH1_1
(IGG2B-KAPPA 40-50
FAB (HEAVY CHAIN))		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		4 / 6 LEU A  30
PHE A 371
TYR A 132
VAL A 104
 None
 1.30A 1ibgH-1xkdA:
undetectable		 1ibgH-1xkdA:
17.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1MZ9_D_VDYD1001_5
(CARTILAGE OLIGOMERIC
MATRIX PROTEIN)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		3 / 3 THR A 226
LEU A 280
VAL A 261
 None
 0.62A 1mz9E-1xkdA:
undetectable		 1mz9E-1xkdA:
7.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1QW6_A_H4BA901_1
(NITRIC-OXIDE
SYNTHASE, BRAIN)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		3 / 3 ARG A 139
VAL A 302
TRP A 219
 None
 1.18A 1qw6A-1xkdA:
undetectable		 1qw6A-1xkdA:
20.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1QWC_A_H4BA901_1
(NITRIC-OXIDE
SYNTHASE, BRAIN)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		3 / 3 ARG A 139
VAL A 302
TRP A 219
 None
 1.20A 1qwcA-1xkdA:
undetectable		 1qwcA-1xkdA:
20.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1VAG_A_H4BA901_1
(NITRIC-OXIDE
SYNTHASE, BRAIN)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		3 / 3 ARG A 139
VAL A 302
TRP A 219
 None
 1.19A 1vagA-1xkdA:
undetectable		 1vagA-1xkdA:
20.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1Z9H_D_IMND476_1
(MEMBRANE-ASSOCIATED
PROSTAGLANDIN E
SYNTHASE-2)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		5 / 12 PRO A  36
ILE A 421
VAL A 381
SER A 365
ILE A 368
 None
 1.17A 1z9hD-1xkdA:
undetectable		 1z9hD-1xkdA:
22.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ZVI_A_H4BA901_1
(NITRIC-OXIDE
SYNTHASE, BRAIN)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		3 / 3 ARG A 139
VAL A 302
TRP A 219
 None
 1.20A 1zviA-1xkdA:
undetectable		 1zviA-1xkdA:
20.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2AJY_H_BEZH306_0
(ANTIBODY 7A1 FAB')		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		4 / 4 ASN A 307
ALA A 305
ARG A 159
TYR A 312
 None
None
ICT  A1002 (-2.7A)
None
 1.35A 2ajyH-1xkdA:
0.0		 2ajyH-1xkdA:
18.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2F9W_A_PAUA6001_0
(PANTOTHENATE KINASE)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		5 / 11 ASN A 122
GLY A  80
ASP A  44
ILE A  41
THR A  95
 NAP  A1001 (-2.8A)
None
None
None
None
 1.35A 2f9wA-1xkdA:
undetectable
2f9wB-1xkdA:
undetectable		 2f9wA-1xkdA:
20.86
2f9wB-1xkdA:
20.86
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2FN1_A_SALA506_1
(SALICYLATE
SYNTHETASE, IRP9)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		5 / 11 ILE A  41
GLY A  45
THR A 345
LEU A 121
GLY A 108
 None
None
NAP  A1001 (-3.2A)
None
None
 1.39A 2fn1A-1xkdA:
undetectable		 2fn1A-1xkdA:
23.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2YFB_A_ACTA501_0
(METHYL-ACCEPTING
CHEMOTAXIS
TRANSDUCER)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		4 / 7 ASP A 315
VAL A 138
ARG A 136
ILE A 157
 CA  A1006 (-2.9A)
None
ICT  A1002 (-3.0A)
None
 1.01A 2yfbA-1xkdA:
0.0		 2yfbA-1xkdA:
21.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2YFB_B_ACTB501_0
(METHYL-ACCEPTING
CHEMOTAXIS
TRANSDUCER)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		4 / 6 ASP A 315
VAL A 138
ARG A 136
ILE A 157
 CA  A1006 (-2.9A)
None
ICT  A1002 (-3.0A)
None
 1.05A 2yfbB-1xkdA:
undetectable		 2yfbB-1xkdA:
21.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ZM9_A_ACAA502_1
(6-AMINOHEXANOATE-DIM
ER HYDROLASE)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		4 / 8 MET A 372
TYR A  66
GLY A 369
ILE A 368
 None
 0.81A 2zm9A-1xkdA:
undetectable		 2zm9A-1xkdA:
22.83
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3BEX_D_PAUD248_0
(TYPE III
PANTOTHENATE KINASE)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		5 / 10 THR A  95
ASN A 122
GLY A  80
ASP A  44
ILE A  41
 None
NAP  A1001 (-2.8A)
None
None
None
 1.43A 3bexC-1xkdA:
undetectable
3bexD-1xkdA:
undetectable		 3bexC-1xkdA:
22.68
3bexD-1xkdA:
22.68
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3BEX_E_PAUE248_0
(TYPE III
PANTOTHENATE KINASE)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		5 / 10 ASN A 122
GLY A  80
ASP A  44
ILE A  41
THR A  95
 NAP  A1001 (-2.8A)
None
None
None
None
 1.44A 3bexE-1xkdA:
undetectable
3bexF-1xkdA:
undetectable		 3bexE-1xkdA:
22.68
3bexF-1xkdA:
22.68
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3BF1_C_PAUC248_0
(TYPE III
PANTOTHENATE KINASE)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		5 / 11 ASN A 122
GLY A  80
ASP A  44
ILE A  41
THR A  95
 NAP  A1001 (-2.8A)
None
None
None
None
 1.43A 3bf1C-1xkdA:
undetectable
3bf1D-1xkdA:
undetectable		 3bf1C-1xkdA:
22.68
3bf1D-1xkdA:
22.68
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3BF1_D_PAUD248_0
(TYPE III
PANTOTHENATE KINASE)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		5 / 11 THR A  95
ASN A 122
GLY A  80
ASP A  44
ILE A  41
 None
NAP  A1001 (-2.8A)
None
None
None
 1.42A 3bf1C-1xkdA:
undetectable
3bf1D-1xkdA:
undetectable		 3bf1C-1xkdA:
22.68
3bf1D-1xkdA:
22.68
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3C6G_A_VD3A701_2
(CYTOCHROME P450 2R1)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		3 / 3 MET A 213
VAL A 302
GLU A 218
 None
 0.81A 3c6gA-1xkdA:
undetectable		 3c6gA-1xkdA:
21.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3CJT_G_SAMG302_0
(RIBOSOMAL PROTEIN
L11
METHYLTRANSFERASE)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		5 / 12 HIS A 343
GLY A  43
VAL A  50
LEU A 110
LEU A 121
 NAP  A1001 (-3.6A)
None
None
NAP  A1001 (-4.9A)
None
 1.11A 3cjtG-1xkdA:
undetectable		 3cjtG-1xkdA:
21.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3CJT_K_SAMK302_0
(RIBOSOMAL PROTEIN
L11
METHYLTRANSFERASE)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		5 / 12 HIS A 343
GLY A  43
VAL A  50
LEU A 110
LEU A 121
 NAP  A1001 (-3.6A)
None
None
NAP  A1001 (-4.9A)
None
 1.09A 3cjtK-1xkdA:
undetectable		 3cjtK-1xkdA:
21.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3CJT_O_SAMO302_0
(RIBOSOMAL PROTEIN
L11
METHYLTRANSFERASE)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		6 / 12 HIS A 343
GLY A  43
GLY A  45
VAL A  50
LEU A 110
LEU A 121
 NAP  A1001 (-3.6A)
None
None
None
NAP  A1001 (-4.9A)
None
 1.29A 3cjtO-1xkdA:
undetectable		 3cjtO-1xkdA:
21.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3CJT_O_SAMO302_0
(RIBOSOMAL PROTEIN
L11
METHYLTRANSFERASE)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		5 / 12 HIS A 343
GLY A  43
GLY A  47
LEU A 110
LEU A 121
 NAP  A1001 (-3.6A)
None
None
NAP  A1001 (-4.9A)
None
 0.91A 3cjtO-1xkdA:
undetectable		 3cjtO-1xkdA:
21.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4DTZ_A_LDPA501_1
(CYTOCHROME P450 BM3
VARIANT 8C8)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		4 / 6 ALA A 305
ALA A 248
LEU A 212
THR A 209
 None
 0.93A 4dtzA-1xkdA:
undetectable		 4dtzA-1xkdA:
20.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4DU2_A_LDPA501_1
(CYTOCHROME P450 BM3
VARIANT B7)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		4 / 7 ALA A 305
ALA A 248
LEU A 212
THR A 209
 None
 0.89A 4du2A-1xkdA:
undetectable		 4du2A-1xkdA:
20.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4DU2_B_LDPB501_1
(CYTOCHROME P450 BM3
VARIANT B7)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		4 / 7 ALA A 305
ALA A 248
LEU A 212
THR A 209
 None
 0.89A 4du2B-1xkdA:
undetectable		 4du2B-1xkdA:
20.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4QCK_A_ASDA404_1
(3-KETOSTEROID-9-ALPH
A-MONOOXYGENASE
OXYGENASE SUBUNIT)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		5 / 12 LEU A 290
ALA A 305
ASN A 309
LEU A 308
ASN A 307
 None
 1.33A 4qckA-1xkdA:
undetectable		 4qckA-1xkdA:
21.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5HYR_B_ESTB601_1
(ESTROGEN RECEPTOR)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		5 / 11 LEU A 280
GLU A 263
ARG A 284
MET A 213
LEU A 253
 None
 1.30A 5hyrB-1xkdA:
0.8		 5hyrB-1xkdA:
19.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ZNI_A_YMZA302_0
(PURINE NUCLEOSIDE
PHOSPHORYLASE)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		5 / 9 VAL A  58
GLY A  47
VAL A  50
GLY A  43
PRO A 109
 None
None
None
None
NAP  A1001 (-4.4A)
 1.11A 5zniA-1xkdA:
2.1		 5zniA-1xkdA:
9.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6HU9_I_PCFI101_0
(CYTOCHROME B-C1
COMPLEX SUBUNIT 1,
MITOCHONDRIAL
CYTOCHROME B-C1
COMPLEX SUBUNIT 9
CYTOCHROME B-C1
COMPLEX SUBUNIT
RIESKE,
MITOCHONDRIAL)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		5 / 11 ASP A 130
GLY A 310
SER A 314
ALA A 317
ASN A 331
 None
 1.15A 6hu9A-1xkdA:
undetectable
6hu9E-1xkdA:
undetectable
6hu9I-1xkdA:
undetectable		 6hu9A-1xkdA:
22.54
6hu9E-1xkdA:
18.89
6hu9I-1xkdA:
9.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6HU9_T_PCFT101_0
(CYTOCHROME B-C1
COMPLEX SUBUNIT 1,
MITOCHONDRIAL
CYTOCHROME B-C1
COMPLEX SUBUNIT 9
CYTOCHROME B-C1
COMPLEX SUBUNIT
RIESKE,
MITOCHONDRIAL)		 1xkd ISOCITRATE
DEHYDROGENASE
(Aeropyrum
pernix) 		5 / 10 ASP A 130
GLY A 310
SER A 314
ALA A 317
ASN A 331
 None
 1.09A 6hu9L-1xkdA:
undetectable
6hu9P-1xkdA:
undetectable
6hu9T-1xkdA:
undetectable		 6hu9L-1xkdA:
22.54
6hu9P-1xkdA:
18.89
6hu9T-1xkdA:
9.58