SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '1yud'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)

Filter list by:

	DrReposER ID / Desc.	Hit PDBID	Hit Macromolecule	Res. Matches	Interface	HETATM	RMSD	Dali Z-score	Seq. Identity (%)
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	1E7A_A_PFLA4002_1 (SERUM ALBUMIN)	1yud	HYPOTHETICAL PROTEIN SO0799 (Shewanella oneidensis)	3 / 3	PHE A 107 LEU A 134 SER A 52	None	0.69A	1e7aA-1yudA: undetectable	1e7aA-1yudA: 14.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	1MX1_A_THAA1_1 (LIVER CARBOXYLESTERASE I)	1yud	HYPOTHETICAL PROTEIN SO0799 (Shewanella oneidensis)	5 / 11	GLY A 19 GLY A 20 SER A 52 LEU A 46 HIS A 55	None	1.06A	1mx1A-1yudA: undetectable	1mx1A-1yudA: 16.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	3G9E_A_RO7A1_1 (PEROXISOME PROLIFERATOR-ACTIVAT ED RECEPTOR GAMMA)	1yud	HYPOTHETICAL PROTEIN SO0799 (Shewanella oneidensis)	5 / 12	GLY A 120 CYH A 121 LEU A 57 VAL A 101 HIS A 16	None	1.21A	3g9eA-1yudA: undetectable	3g9eA-1yudA: 19.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	5NR3_A_95EA401_0 (DNA (CYTOSINE-5)-METHYLT RANSFERASE 3B)	1yud	HYPOTHETICAL PROTEIN SO0799 (Shewanella oneidensis)	4 / 7	ILE A 42 PHE A 44 TRP A 63 SER A 109	None	1.32A	5nr3A-1yudA: 0.0	5nr3A-1yudA: 18.29

[["DrReposER ID","Desc.","Hit PDB","Hit molecule","Hit organism","Res. no.","Interface","HETATM","RMSD","Z-score","Seq ID"],["1E7A_A_PFLA4002_1","SERUM ALBUMIN","1yud","HYPOTHETICAL PROTEIN SO0799","Shewanella oneidensis",3,"PHE A 107;LEU A 134;SER A  52","None","0.69A","1e7aA-1yudA:undetectable","1e7aA-1yudA:14.73"],["1MX1_A_THAA1_1","LIVER CARBOXYLESTERASE I","1yud","HYPOTHETICAL PROTEIN SO0799","Shewanella oneidensis",5,"GLY A  19;GLY A  20;SER A  52;LEU A  46;HIS A  55","None","1.06A","1mx1A-1yudA:undetectable","1mx1A-1yudA:16.79"],["3G9E_A_RO7A1_1","PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA","1yud","HYPOTHETICAL PROTEIN SO0799","Shewanella oneidensis",5,"GLY A 120;CYH A 121;LEU A  57;VAL A 101;HIS A  16","None","1.21A","3g9eA-1yudA:undetectable","3g9eA-1yudA:19.37"],["5NR3_A_95EA401_0","DNA (CYTOSINE-5)-METHYLTRANSFERASE 3B","1yud","HYPOTHETICAL PROTEIN SO0799","Shewanella oneidensis",4,"ILE A  42;PHE A  44;TRP A  63;SER A 109","None","1.32A","5nr3A-1yudA:0.0","5nr3A-1yudA:18.29"]]