SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '2b4m'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1UPF_D_URFD999_1
(URACIL
PHOSPHORIBOSYLTRANSF
ERASE)		 2b4m GLYCINE
BETAINE-BINDING
PROTEIN
(Bacillus
subtilis) 		4 / 4 MET A 209
ALA A 212
TYR A 237
ILE A 213
 None
 1.36A 1upfD-2b4mA:
undetectable		 1upfD-2b4mA:
22.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3BF1_D_PAUD248_0
(TYPE III
PANTOTHENATE KINASE)		 2b4m GLYCINE
BETAINE-BINDING
PROTEIN
(Bacillus
subtilis) 		5 / 11 LEU A 192
ASN A 113
VAL A 166
GLY A 168
ILE A 171
 None
 1.24A 3bf1C-2b4mA:
undetectable
3bf1D-2b4mA:
undetectable		 3bf1C-2b4mA:
20.49
3bf1D-2b4mA:
20.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3BF1_F_PAUF248_0
(TYPE III
PANTOTHENATE KINASE)		 2b4m GLYCINE
BETAINE-BINDING
PROTEIN
(Bacillus
subtilis) 		5 / 11 LEU A 192
ASN A 113
VAL A 166
GLY A 168
ILE A 171
 None
 1.25A 3bf1E-2b4mA:
undetectable
3bf1F-2b4mA:
undetectable		 3bf1E-2b4mA:
20.49
3bf1F-2b4mA:
20.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3QJ7_A_SPMA264_1
(THYMIDYLATE SYNTHASE)		 2b4m GLYCINE
BETAINE-BINDING
PROTEIN
(Bacillus
subtilis) 		4 / 8 LEU A  86
ASP A  88
ASP A  37
SER A  92
 None
 0.73A 3qj7A-2b4mA:
undetectable
3qj7D-2b4mA:
undetectable		 3qj7A-2b4mA:
21.90
3qj7D-2b4mA:
21.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4BQT_C_C5EC301_0
(SOLUBLE
ACETYLCHOLINE
RECEPTOR)		 2b4m GLYCINE
BETAINE-BINDING
PROTEIN
(Bacillus
subtilis) 		4 / 8 VAL A 257
TYR A  61
TYR A 260
ILE A  69
 None
 1.27A 4bqtC-2b4mA:
undetectable
4bqtD-2b4mA:
undetectable		 4bqtC-2b4mA:
20.00
4bqtD-2b4mA:
20.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4I89_B_1FLB201_1
(TRANSTHYRETIN)		 2b4m GLYCINE
BETAINE-BINDING
PROTEIN
(Bacillus
subtilis) 		4 / 4 LYS A 240
ALA A 214
SER A 217
THR A 211
 None
 1.25A 4i89B-2b4mA:
0.0		 4i89B-2b4mA:
19.78
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4JQ1_B_NPSB401_1
(ALDO-KETO REDUCTASE
FAMILY 1 MEMBER C2)		 2b4m GLYCINE
BETAINE-BINDING
PROTEIN
(Bacillus
subtilis) 		4 / 8 VAL A 149
VAL A 187
ILE A 188
LEU A 195
 None
 0.93A 4jq1B-2b4mA:
undetectable		 4jq1B-2b4mA:
19.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4L1W_B_STRB402_1
(ALDO-KETO REDUCTASE
FAMILY 1 MEMBER C2)		 2b4m GLYCINE
BETAINE-BINDING
PROTEIN
(Bacillus
subtilis) 		4 / 6 VAL A 149
VAL A 187
ILE A 188
LEU A 195
 None
 1.00A 4l1wB-2b4mA:
undetectable		 4l1wB-2b4mA:
20.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4NKX_B_STRB601_1
(STEROID
17-ALPHA-HYDROXYLASE
/17,20 LYASE)		 2b4m GLYCINE
BETAINE-BINDING
PROTEIN
(Bacillus
subtilis) 		5 / 12 LEU A  45
ALA A  34
ILE A  69
ILE A 267
VAL A 256
 None
 0.79A 4nkxB-2b4mA:
undetectable		 4nkxB-2b4mA:
17.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4TWD_A_377A402_1
(CYS-LOOP
LIGAND-GATED ION
CHANNEL)		 2b4m GLYCINE
BETAINE-BINDING
PROTEIN
(Bacillus
subtilis) 		5 / 9 ALA A 212
ALA A 206
SER A 223
ALA A 174
SER A 221
 None
 1.32A 4twdA-2b4mA:
undetectable
4twdB-2b4mA:
undetectable
4twdC-2b4mA:
undetectable
4twdD-2b4mA:
undetectable
4twdE-2b4mA:
undetectable		 4twdA-2b4mA:
19.00
4twdB-2b4mA:
19.00
4twdC-2b4mA:
19.00
4twdD-2b4mA:
19.00
4twdE-2b4mA:
19.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4WNW_B_RTZB602_2
(CYTOCHROME P450 2D6)		 2b4m GLYCINE
BETAINE-BINDING
PROTEIN
(Bacillus
subtilis) 		3 / 3 GLU A 181
ILE A  21
ALA A 206
 PBE  A 311 ( 4.6A)
None
None
 0.66A 4wnwB-2b4mA:
undetectable		 4wnwB-2b4mA:
20.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4WNW_B_RTZB602_2
(CYTOCHROME P450 2D6)		 2b4m GLYCINE
BETAINE-BINDING
PROTEIN
(Bacillus
subtilis) 		3 / 3 GLU A 181
ILE A  27
ALA A 206
 PBE  A 311 ( 4.6A)
PBE  A 311 (-3.6A)
None
 0.67A 4wnwB-2b4mA:
undetectable		 4wnwB-2b4mA:
20.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5O96_B_SAMB501_0
(RIBOSOMAL RNA SMALL
SUBUNIT
METHYLTRANSFERASE E)		 2b4m GLYCINE
BETAINE-BINDING
PROTEIN
(Bacillus
subtilis) 		5 / 9 LEU A 192
ILE A 171
GLY A 168
LEU A 117
ALA A 114
 None
 1.02A 5o96A-2b4mA:
undetectable
5o96B-2b4mA:
undetectable		 5o96A-2b4mA:
21.81
5o96B-2b4mA:
21.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5Q1S_A_AWYA1103_0
(DNA CROSS-LINK
REPAIR 1A PROTEIN)		 2b4m GLYCINE
BETAINE-BINDING
PROTEIN
(Bacillus
subtilis) 		4 / 6 LYS A 272
VAL A  14
LYS A   9
ILE A  68
 None
 1.33A 5q1sA-2b4mA:
undetectable		 5q1sA-2b4mA:
20.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5Z6F_A_FOLA201_0
(DIHYDROFOLATE
REDUCTASE)		 2b4m GLYCINE
BETAINE-BINDING
PROTEIN
(Bacillus
subtilis) 		5 / 12 ILE A 171
ALA A 218
PHE A 107
THR A 101
ILE A 244
 None
 1.33A 5z6fA-2b4mA:
undetectable		 5z6fA-2b4mA:
19.86
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6EBP_A_DAHA123_0
(RIBONUCLEOSIDE-DIPHO
SPHATE REDUCTASE,
BETA SUBUNIT)		 2b4m GLYCINE
BETAINE-BINDING
PROTEIN
(Bacillus
subtilis) 		5 / 9 THR A  31
ASP A  32
SER A  47
GLY A  20
ILE A  46
 None
 1.13A 6ebpA-2b4mA:
undetectable		 6ebpA-2b4mA:
13.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6EBP_C_DAHC123_0
(RIBONUCLEOSIDE-DIPHO
SPHATE REDUCTASE,
BETA SUBUNIT)		 2b4m GLYCINE
BETAINE-BINDING
PROTEIN
(Bacillus
subtilis) 		5 / 10 THR A  31
ASP A  32
SER A  47
GLY A  20
ILE A  46
 None
 1.17A 6ebpC-2b4mA:
undetectable		 6ebpC-2b4mA:
13.38