SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '2cdp'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1HK1_A_T44A3003_1
(SERUM ALBUMIN)		 2cdp BETA-AGARASE 1
(Saccharophagus
degradans) 		4 / 6 HIS A 115
ILE A  51
ALA A  47
VAL A   7
 None
None
None
CL  A1143 ( 4.1A)
 0.80A 1hk1A-2cdpA:
undetectable		 1hk1A-2cdpA:
12.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3PO7_A_ZONA601_1
(AMINE OXIDASE
[FLAVIN-CONTAINING]
B)		 2cdp BETA-AGARASE 1
(Saccharophagus
degradans) 		4 / 8 LEU A 131
TYR A  63
PHE A 134
TYR A  49
 None
 1.20A 3po7A-2cdpA:
undetectable		 3po7A-2cdpA:
14.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3V4T_H_ACTH502_0
(UDP-N-ACETYLGLUCOSAM
INE
1-CARBOXYVINYLTRANSF
ERASE)		 2cdp BETA-AGARASE 1
(Saccharophagus
degradans) 		3 / 3 SER A 124
GLY A 123
GLN A  43
 None
 0.45A 3v4tH-2cdpA:
undetectable		 3v4tH-2cdpA:
17.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4A79_A_P1BA601_1
(AMINE OXIDASE
[FLAVIN-CONTAINING]
B)		 2cdp BETA-AGARASE 1
(Saccharophagus
degradans) 		5 / 12 PRO A  93
LEU A 131
TYR A  63
PHE A 134
TYR A  49
 None
 1.43A 4a79A-2cdpA:
undetectable		 4a79A-2cdpA:
14.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4A79_B_P1BB601_1
(AMINE OXIDASE
[FLAVIN-CONTAINING]
B)		 2cdp BETA-AGARASE 1
(Saccharophagus
degradans) 		5 / 12 PRO A  93
LEU A 131
TYR A  63
PHE A 134
TYR A  49
 None
 1.45A 4a79B-2cdpA:
undetectable		 4a79B-2cdpA:
14.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4IKJ_A_SUZA201_1
(TRANSTHYRETIN)		 2cdp BETA-AGARASE 1
(Saccharophagus
degradans) 		4 / 7 ALA A   6
SER A 137
THR A 135
SER A  62
 None
 0.97A 4ikjA-2cdpA:
undetectable
4ikjB-2cdpA:
undetectable		 4ikjA-2cdpA:
20.61
4ikjB-2cdpA:
20.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4MM7_A_29JA603_1
(TRANSPORTER)		 2cdp BETA-AGARASE 1
(Saccharophagus
degradans) 		5 / 10 TYR A  63
VAL A 108
PHE A  76
SER A  62
GLY A 105
 None
CL  A1144 ( 4.2A)
None
None
EDO  A1141 (-4.0A)
 1.03A 4mm7A-2cdpA:
undetectable		 4mm7A-2cdpA:
14.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4MM9_A_FVXA603_1
(TRANSPORTER)		 2cdp BETA-AGARASE 1
(Saccharophagus
degradans) 		5 / 11 TYR A  63
VAL A 108
PHE A  76
SER A  62
GLY A 105
 None
CL  A1144 ( 4.2A)
None
None
EDO  A1141 (-4.0A)
 1.13A 4mm9A-2cdpA:
undetectable		 4mm9A-2cdpA:
14.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4MMA_A_CXXA603_1
(TRANSPORTER)		 2cdp BETA-AGARASE 1
(Saccharophagus
degradans) 		5 / 11 TYR A  63
VAL A 108
PHE A  76
SER A  62
GLY A 105
 None
CL  A1144 ( 4.2A)
None
None
EDO  A1141 (-4.0A)
 1.04A 4mmaA-2cdpA:
undetectable		 4mmaA-2cdpA:
14.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4MMC_A_29JA603_1
(TRANSPORTER)		 2cdp BETA-AGARASE 1
(Saccharophagus
degradans) 		5 / 10 TYR A  63
VAL A 108
PHE A  76
SER A  62
GLY A 105
 None
CL  A1144 ( 4.2A)
None
None
EDO  A1141 (-4.0A)
 0.97A 4mmcA-2cdpA:
undetectable		 4mmcA-2cdpA:
14.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4MMD_B_29EB603_1
(TRANSPORTER)		 2cdp BETA-AGARASE 1
(Saccharophagus
degradans) 		5 / 12 TYR A  63
VAL A 108
PHE A  76
SER A  62
GLY A 105
 None
CL  A1144 ( 4.2A)
None
None
EDO  A1141 (-4.0A)
 1.04A 4mmdB-2cdpA:
undetectable		 4mmdB-2cdpA:
14.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4MME_A_29QA603_1
(TRANSPORTER)		 2cdp BETA-AGARASE 1
(Saccharophagus
degradans) 		5 / 9 TYR A  63
VAL A 108
PHE A  76
SER A  62
GLY A 105
 None
CL  A1144 ( 4.2A)
None
None
EDO  A1141 (-4.0A)
 1.01A 4mmeA-2cdpA:
undetectable		 4mmeA-2cdpA:
14.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4MME_B_29QB603_1
(TRANSPORTER)		 2cdp BETA-AGARASE 1
(Saccharophagus
degradans) 		5 / 9 TYR A  63
VAL A 108
PHE A  76
SER A  62
GLY A 105
 None
CL  A1144 ( 4.2A)
None
None
EDO  A1141 (-4.0A)
 0.93A 4mmeB-2cdpA:
undetectable		 4mmeB-2cdpA:
14.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4MMF_A_29QA603_1
(TRANSPORTER)		 2cdp BETA-AGARASE 1
(Saccharophagus
degradans) 		5 / 9 TYR A  63
VAL A 108
PHE A  76
SER A  62
GLY A 105
 None
CL  A1144 ( 4.2A)
None
None
EDO  A1141 (-4.0A)
 1.03A 4mmfA-2cdpA:
undetectable		 4mmfA-2cdpA:
14.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4MMF_B_29QB603_1
(TRANSPORTER)		 2cdp BETA-AGARASE 1
(Saccharophagus
degradans) 		5 / 9 TYR A  63
VAL A 108
PHE A  76
SER A  62
GLY A 105
 None
CL  A1144 ( 4.2A)
None
None
EDO  A1141 (-4.0A)
 1.01A 4mmfB-2cdpA:
undetectable		 4mmfB-2cdpA:
14.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4QOI_A_ML1A303_1
(RIBOSYLDIHYDRONICOTI
NAMIDE DEHYDROGENASE
[QUINONE])		 2cdp BETA-AGARASE 1
(Saccharophagus
degradans) 		4 / 8 TYR A  30
PHE A 100
GLY A  68
ASN A 130
 AAL  A1006 ( 4.8A)
None
None
AAL  A1006 (-3.4A)
 0.97A 4qoiA-2cdpA:
undetectable
4qoiB-2cdpA:
undetectable		 4qoiA-2cdpA:
20.87
4qoiB-2cdpA:
20.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4RTM_A_SAMA301_0
(DNA ADENINE
METHYLASE)		 2cdp BETA-AGARASE 1
(Saccharophagus
degradans) 		5 / 12 GLY A  72
GLY A 121
ALA A 122
SER A  28
TYR A  40
 None
None
None
None
AAL  A1006 ( 3.8A)
 1.00A 4rtmA-2cdpA:
undetectable		 4rtmA-2cdpA:
23.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5L94_A_TESA502_1
(CYTOCHROME P450)		 2cdp BETA-AGARASE 1
(Saccharophagus
degradans) 		5 / 8 VAL A  15
ALA A   9
VAL A  41
HIS A 120
VAL A  27
 None
 1.28A 5l94A-2cdpA:
undetectable		 5l94A-2cdpA:
15.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5OJ0_A_9WTA801_0
(PENICILLIN-BINDING
PROTEIN 2X)		 2cdp BETA-AGARASE 1
(Saccharophagus
degradans) 		5 / 12 SER A  73
GLN A 101
SER A 124
GLY A  71
THR A  70
 None
 1.41A 5oj0A-2cdpA:
undetectable		 5oj0A-2cdpA:
12.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5YOD_F_BEZF201_0
(NS3 PROTEASE)		 2cdp BETA-AGARASE 1
(Saccharophagus
degradans) 		4 / 5 HIS A 115
ALA A 112
SER A 111
TYR A 109
 None
 1.43A 5yodF-2cdpA:
0.0		 5yodF-2cdpA:
20.62