SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '2dkn'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1KIA_A_SAMA293_0
(GLYCINE
N-METHYLTRANSFERASE)		 2dkn 3-ALPHA-HYDROXYSTERO
ID DEHYDROGENASE
(Pseudomonas
sp.
B-0831) 		5 / 12 TYR A 153
ILE A  13
GLY A 113
SER A 156
GLY A 184
 NAI  A4000 (-4.8A)
NAI  A4000 (-4.0A)
None
None
NAI  A4000 (-4.8A)
 0.98A 1kiaA-2dknA:
undetectable		 1kiaA-2dknA:
25.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1NBH_B_SAMB1293_0
(GLYCINE
N-METHYLTRANSFERASE)		 2dkn 3-ALPHA-HYDROXYSTERO
ID DEHYDROGENASE
(Pseudomonas
sp.
B-0831) 		5 / 12 TYR A 153
ILE A  13
GLY A 113
SER A 156
GLY A 184
 NAI  A4000 (-4.8A)
NAI  A4000 (-4.0A)
None
None
NAI  A4000 (-4.8A)
 1.01A 1nbhB-2dknA:
undetectable		 1nbhB-2dknA:
25.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1NBI_A_SAMA293_0
(GLYCINE
N-METHYLTRANSFERASE)		 2dkn 3-ALPHA-HYDROXYSTERO
ID DEHYDROGENASE
(Pseudomonas
sp.
B-0831) 		5 / 12 TYR A 153
ILE A  13
GLY A 113
SER A 156
GLY A 184
 NAI  A4000 (-4.8A)
NAI  A4000 (-4.0A)
None
None
NAI  A4000 (-4.8A)
 1.07A 1nbiA-2dknA:
5.2		 1nbiA-2dknA:
25.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1NBI_B_SAMB1293_0
(GLYCINE
N-METHYLTRANSFERASE)		 2dkn 3-ALPHA-HYDROXYSTERO
ID DEHYDROGENASE
(Pseudomonas
sp.
B-0831) 		5 / 12 TYR A 153
ILE A  13
GLY A 113
SER A 156
GLY A 184
 NAI  A4000 (-4.8A)
NAI  A4000 (-4.0A)
None
None
NAI  A4000 (-4.8A)
 1.06A 1nbiB-2dknA:
5.2		 1nbiB-2dknA:
25.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1UAY_A_ADNA1001_1
(TYPE II
3-HYDROXYACYL-COA
DEHYDROGENASE)		 2dkn 3-ALPHA-HYDROXYSTERO
ID DEHYDROGENASE
(Pseudomonas
sp.
B-0831) 		8 / 11 GLY A   8
ALA A  10
SER A  11
ASP A  32
ASP A  41
ALA A  70
VAL A  72
VAL A  85
 NAI  A4000 (-3.5A)
NAI  A4000 ( 3.9A)
NAI  A4000 (-2.6A)
NAI  A4000 (-2.7A)
NAI  A4000 (-4.1A)
NAI  A4000 (-3.7A)
NAI  A4000 (-4.9A)
NAI  A4000 (-4.4A)
 0.70A 1uayA-2dknA:
25.5		 1uayA-2dknA:
31.29
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1UAY_B_ADNB1002_1
(TYPE II
3-HYDROXYACYL-COA
DEHYDROGENASE)		 2dkn 3-ALPHA-HYDROXYSTERO
ID DEHYDROGENASE
(Pseudomonas
sp.
B-0831) 		8 / 10 GLY A   8
ALA A  10
SER A  11
ASP A  32
ASP A  41
ALA A  70
VAL A  72
VAL A  85
 NAI  A4000 (-3.5A)
NAI  A4000 ( 3.9A)
NAI  A4000 (-2.6A)
NAI  A4000 (-2.7A)
NAI  A4000 (-4.1A)
NAI  A4000 (-3.7A)
NAI  A4000 (-4.9A)
NAI  A4000 (-4.4A)
 0.71A 1uayB-2dknA:
25.4		 1uayB-2dknA:
31.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1UKB_A_BEZA1300_0
(2-HYDROXY-6-OXO-7-ME
THYLOCTA-2,4-DIENOAT
E HYDROLASE)		 2dkn 3-ALPHA-HYDROXYSTERO
ID DEHYDROGENASE
(Pseudomonas
sp.
B-0831) 		5 / 11 GLY A 147
ALA A 143
LEU A 125
VAL A  82
VAL A  83
 None
 0.95A 1ukbA-2dknA:
4.9		 1ukbA-2dknA:
24.50
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2HC4_A_VDXA525_2
(VITAMIN D RECEPTOR)		 2dkn 3-ALPHA-HYDROXYSTERO
ID DEHYDROGENASE
(Pseudomonas
sp.
B-0831) 		4 / 7 LEU A  94
LEU A  93
ILE A  29
ARG A  58
 None
 1.21A 2hc4A-2dknA:
undetectable		 2hc4A-2dknA:
22.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2JAP_A_J01A1249_1
(CLAVALDEHYDE
DEHYDROGENASE)		 2dkn 3-ALPHA-HYDROXYSTERO
ID DEHYDROGENASE
(Pseudomonas
sp.
B-0831) 		5 / 12 SER A 114
ILE A 115
ALA A 116
TYR A 153
LEU A 190
 NAI  A4000 (-3.5A)
None
None
NAI  A4000 (-4.8A)
NAI  A4000 (-3.7A)
 0.48A 2japA-2dknA:
25.6		 2japA-2dknA:
26.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2JAP_B_J01B1249_1
(CLAVALDEHYDE
DEHYDROGENASE)		 2dkn 3-ALPHA-HYDROXYSTERO
ID DEHYDROGENASE
(Pseudomonas
sp.
B-0831) 		5 / 12 SER A 114
ILE A 115
ALA A 116
TYR A 153
LEU A 190
 NAI  A4000 (-3.5A)
None
None
NAI  A4000 (-4.8A)
NAI  A4000 (-3.7A)
 0.47A 2japB-2dknA:
25.6		 2japB-2dknA:
26.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2JAP_C_J01C1249_1
(CLAVALDEHYDE
DEHYDROGENASE)		 2dkn 3-ALPHA-HYDROXYSTERO
ID DEHYDROGENASE
(Pseudomonas
sp.
B-0831) 		5 / 12 SER A 114
ILE A 115
ALA A 116
TYR A 153
LEU A 190
 NAI  A4000 (-3.5A)
None
None
NAI  A4000 (-4.8A)
NAI  A4000 (-3.7A)
 0.50A 2japC-2dknA:
25.6		 2japC-2dknA:
26.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2JAP_D_J01D1249_1
(CLAVALDEHYDE
DEHYDROGENASE)		 2dkn 3-ALPHA-HYDROXYSTERO
ID DEHYDROGENASE
(Pseudomonas
sp.
B-0831) 		5 / 12 SER A 114
ILE A 115
ALA A 116
TYR A 153
LEU A 190
 NAI  A4000 (-3.5A)
None
None
NAI  A4000 (-4.8A)
NAI  A4000 (-3.7A)
 0.48A 2japD-2dknA:
25.6		 2japD-2dknA:
26.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2NNI_A_MTKA501_1
(CYTOCHROME P450 2C8)		 2dkn 3-ALPHA-HYDROXYSTERO
ID DEHYDROGENASE
(Pseudomonas
sp.
B-0831) 		5 / 12 THR A 188
ASN A  86
VAL A 220
ALA A 221
VAL A 110
 NAI  A4000 (-2.7A)
NAI  A4000 ( 4.8A)
None
None
None
 1.04A 2nniA-2dknA:
undetectable		 2nniA-2dknA:
19.08
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2UVN_A_ECNA1409_1
(CYTOCHROME P450 130)		 2dkn 3-ALPHA-HYDROXYSTERO
ID DEHYDROGENASE
(Pseudomonas
sp.
B-0831) 		5 / 12 ASP A  32
THR A  50
GLY A  47
GLY A  46
THR A  44
 NAI  A4000 (-2.7A)
None
None
None
None
 0.99A 2uvnA-2dknA:
undetectable		 2uvnA-2dknA:
22.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2UXP_A_CLMA1211_0
(HTH-TYPE
TRANSCRIPTIONAL
REGULATOR TTGR)		 2dkn 3-ALPHA-HYDROXYSTERO
ID DEHYDROGENASE
(Pseudomonas
sp.
B-0831) 		5 / 8 ALA A 109
LEU A 101
LEU A  63
CYH A  68
VAL A  55
 None
 1.29A 2uxpA-2dknA:
undetectable		 2uxpA-2dknA:
25.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2Y7K_A_SALA1303_1
(LYSR-TYPE REGULATORY
PROTEIN)		 2dkn 3-ALPHA-HYDROXYSTERO
ID DEHYDROGENASE
(Pseudomonas
sp.
B-0831) 		4 / 7 SER A   2
ILE A   4
PRO A 230
GLY A 229
 None
 0.93A 2y7kA-2dknA:
undetectable		 2y7kA-2dknA:
23.70
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3AX9_A_SALA1341_1
(XANTHINE
DEHYDROGENASE/OXIDAS
E)		 2dkn 3-ALPHA-HYDROXYSTERO
ID DEHYDROGENASE
(Pseudomonas
sp.
B-0831) 		4 / 8 LEU A 190
SER A 194
THR A 204
ALA A 185
 NAI  A4000 (-3.7A)
None
None
NAI  A4000 (-4.4A)
 1.00A 3ax9A-2dknA:
undetectable		 3ax9A-2dknA:
12.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3O02_B_JN3B1_1
(CELL INVASION
PROTEIN SIPD)		 2dkn 3-ALPHA-HYDROXYSTERO
ID DEHYDROGENASE
(Pseudomonas
sp.
B-0831) 		5 / 10 ILE A   4
ALA A 109
LEU A  63
LEU A 101
VAL A 176
 None
 1.20A 3o02A-2dknA:
undetectable
3o02B-2dknA:
undetectable		 3o02A-2dknA:
21.66
3o02B-2dknA:
21.66
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3O02_B_JN3B1_1
(CELL INVASION
PROTEIN SIPD)		 2dkn 3-ALPHA-HYDROXYSTERO
ID DEHYDROGENASE
(Pseudomonas
sp.
B-0831) 		5 / 10 ILE A   4
ASN A 179
ALA A 109
LEU A  63
LEU A 101
 None
 1.06A 3o02A-2dknA:
undetectable
3o02B-2dknA:
undetectable		 3o02A-2dknA:
21.66
3o02B-2dknA:
21.66
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4R38_A_RBFA201_1
(BLUE-LIGHT-ACTIVATED
HISTIDINE KINASE 2)		 2dkn 3-ALPHA-HYDROXYSTERO
ID DEHYDROGENASE
(Pseudomonas
sp.
B-0831) 		5 / 12 ALA A 209
ALA A 116
ILE A 115
LEU A 191
GLY A 214
 None
None
None
NAI  A4000 ( 3.9A)
None
 0.98A 4r38A-2dknA:
undetectable		 4r38A-2dknA:
22.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4R38_B_RBFB201_1
(BLUE-LIGHT-ACTIVATED
HISTIDINE KINASE 2)		 2dkn 3-ALPHA-HYDROXYSTERO
ID DEHYDROGENASE
(Pseudomonas
sp.
B-0831) 		5 / 12 ALA A 209
ALA A 116
ILE A 115
LEU A 191
GLY A 214
 None
None
None
NAI  A4000 ( 3.9A)
None
 0.96A 4r38B-2dknA:
undetectable		 4r38B-2dknA:
22.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4R38_C_RBFC201_1
(BLUE-LIGHT-ACTIVATED
HISTIDINE KINASE 2)		 2dkn 3-ALPHA-HYDROXYSTERO
ID DEHYDROGENASE
(Pseudomonas
sp.
B-0831) 		5 / 12 ALA A 209
ALA A 116
ILE A 115
LEU A 191
GLY A 214
 None
None
None
NAI  A4000 ( 3.9A)
None
 0.97A 4r38C-2dknA:
undetectable		 4r38C-2dknA:
22.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4R38_D_RBFD201_1
(BLUE-LIGHT-ACTIVATED
HISTIDINE KINASE 2)		 2dkn 3-ALPHA-HYDROXYSTERO
ID DEHYDROGENASE
(Pseudomonas
sp.
B-0831) 		5 / 12 ALA A 209
ALA A 116
ILE A 115
LEU A 191
GLY A 214
 None
None
None
NAI  A4000 ( 3.9A)
None
 0.92A 4r38D-2dknA:
undetectable		 4r38D-2dknA:
22.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ESL_A_1YNA701_1
(LANOSTEROL 14-ALPHA
DEMETHYLASE)		 2dkn 3-ALPHA-HYDROXYSTERO
ID DEHYDROGENASE
(Pseudomonas
sp.
B-0831) 		5 / 12 GLY A 175
ILE A  13
GLY A 113
THR A 161
HIS A 236
 None
NAI  A4000 (-4.0A)
None
None
None
 1.27A 5eslA-2dknA:
undetectable		 5eslA-2dknA:
19.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5O96_B_SAMB501_0
(RIBOSOMAL RNA SMALL
SUBUNIT
METHYLTRANSFERASE E)		 2dkn 3-ALPHA-HYDROXYSTERO
ID DEHYDROGENASE
(Pseudomonas
sp.
B-0831) 		5 / 9 ARG A  33
ILE A  13
GLY A  14
GLY A   8
LEU A 190
 NAI  A4000 (-3.8A)
NAI  A4000 (-4.0A)
None
NAI  A4000 (-3.5A)
NAI  A4000 (-3.7A)
 0.89A 5o96A-2dknA:
undetectable
5o96B-2dknA:
2.1		 5o96A-2dknA:
25.62
5o96B-2dknA:
25.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5YSI_A_NCAA1001_0
(UBIQUITINATING/DEUBI
QUITINATING ENZYME
SDEA)		 2dkn 3-ALPHA-HYDROXYSTERO
ID DEHYDROGENASE
(Pseudomonas
sp.
B-0831) 		4 / 6 ARG A 213
GLY A 212
SER A 215
VAL A 208
 None
 0.74A 5ysiA-2dknA:
undetectable		 5ysiA-2dknA:
21.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6HU9_H_PCFH604_0
(CYTOCHROME B-C1
COMPLEX SUBUNIT 8
CYTOCHROME C OXIDASE
POLYPEPTIDE 5A,
MITOCHONDRIAL)		 2dkn 3-ALPHA-HYDROXYSTERO
ID DEHYDROGENASE
(Pseudomonas
sp.
B-0831) 		5 / 8 GLY A  73
GLY A 184
SER A 114
ALA A 117
LYS A 157
 None
NAI  A4000 (-4.8A)
NAI  A4000 (-3.5A)
None
NAI  A4000 (-2.8A)
 1.48A 6hu9H-2dknA:
undetectable
6hu9e-2dknA:
undetectable		 6hu9H-2dknA:
12.96
6hu9e-2dknA:
18.40