SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '2gdm'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1FSL_A_NIOA145_1
(LEGHEMOGLOBIN A)		 2gdm LEGHEMOGLOBIN (OXY)
(Lupinus
luteus) 		4 / 8 PHE A  29
PHE A  44
PHE A  46
VAL A 110
 None
HEM  A 154 (-4.2A)
HEM  A 154 ( 4.9A)
HEM  A 154 (-4.4A)
 0.65A 1fslA-2gdmA:
22.6		 1fslA-2gdmA:
55.56
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1FSL_B_NIOB145_1
(LEGHEMOGLOBIN A)		 2gdm LEGHEMOGLOBIN (OXY)
(Lupinus
luteus) 		4 / 8 PHE A  29
PHE A  44
PHE A  46
VAL A 110
 None
HEM  A 154 (-4.2A)
HEM  A 154 ( 4.9A)
HEM  A 154 (-4.4A)
 0.58A 1fslB-2gdmA:
22.4		 1fslB-2gdmA:
55.56
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1LH6_A_NIOA155_1
(LEGHEMOGLOBIN A
(NICOTINATE MET))		 2gdm LEGHEMOGLOBIN (OXY)
(Lupinus
luteus) 		6 / 7 PHE A  29
PHE A  30
PHE A  44
PHE A  46
VAL A  67
HIS A  97
 None
None
HEM  A 154 (-4.2A)
HEM  A 154 ( 4.9A)
HEM  A 154 ( 4.1A)
HEM  A 154 (-3.3A)
 0.47A 1lh6A-2gdmA:
24.6		 1lh6A-2gdmA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1MZ9_D_VDYD1001_5
(CARTILAGE OLIGOMERIC
MATRIX PROTEIN)		 2gdm LEGHEMOGLOBIN (OXY)
(Lupinus
luteus) 		3 / 3 THR A  89
LEU A  93
VAL A  96
 None
HEM  A 154 (-4.6A)
None
 0.53A 1mz9E-2gdmA:
undetectable		 1mz9E-2gdmA:
13.55
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2LH6_A_NIOA155_1
(LEGHEMOGLOBIN A
(NICOTINATE MET))		 2gdm LEGHEMOGLOBIN (OXY)
(Lupinus
luteus) 		4 / 5 PHE A  29
PHE A  30
PHE A  46
VAL A  67
 None
None
HEM  A 154 ( 4.9A)
HEM  A 154 ( 4.1A)
 0.50A 2lh6A-2gdmA:
24.6		 2lh6A-2gdmA:
100.00