SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '2gup'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
11GS_A_EAAA211_1
(GLUTATHIONE
S-TRANSFERASE)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
4 / 7 TYR A  78
VAL A  76
ILE A  30
GLY A   9
None
0.81A 11gsA-2gupA:
undetectable
11gsA-2gupA:
21.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1GRM_A_DVAA6_0
(GRAMICIDIN A)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
3 / 3 ALA A 204
VAL A 173
TRP A 185
None
0.94A 1grmA-2gupA:
undetectable
1grmA-2gupA:
5.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1GRM_B_DVAB6_0
(GRAMICIDIN A)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
3 / 3 ALA A 204
VAL A 173
TRP A 185
None
0.94A 1grmB-2gupA:
undetectable
1grmB-2gupA:
5.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1JO4_A_DVAA6_0
(GRAMICIDIN C)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
3 / 3 ALA A 204
VAL A 173
TRP A 185
None
0.91A 1jo4A-2gupA:
undetectable
1jo4A-2gupA:
6.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1JO4_B_DVAB6_0
(GRAMICIDIN C)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
3 / 3 ALA A 204
VAL A 173
TRP A 185
None
0.91A 1jo4B-2gupA:
undetectable
1jo4B-2gupA:
6.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1MAG_A_DVAA6_0
(GRAMICIDIN A)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
3 / 3 ALA A 204
VAL A 173
TRP A 185
None
0.96A 1magA-2gupA:
undetectable
1magA-2gupA:
5.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1MAG_B_DVAB6_0
(GRAMICIDIN A)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
3 / 3 ALA A 204
VAL A 173
TRP A 185
None
0.96A 1magB-2gupA:
undetectable
1magB-2gupA:
5.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1TD2_A_PXLA288_1
(PYRIDOXAMINE KINASE)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
5 / 10 SER A 107
VAL A 104
ALA A 273
HIS A 270
GLN A 236
None
SUC  A 290 (-4.7A)
SUC  A 290 ( 4.2A)
SUC  A 290 ( 3.9A)
None
1.49A 1td2A-2gupA:
undetectable
1td2A-2gupA:
21.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1X7P_A_SAMA301_0
(RRNA
METHYLTRANSFERASE)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
6 / 11 GLU A 108
GLY A 231
ILE A 132
SER A 107
ALA A 101
ALA A 130
None
SUC  A 290 ( 4.5A)
None
None
None
None
1.36A 1x7pA-2gupA:
undetectable
1x7pB-2gupA:
undetectable
1x7pA-2gupA:
21.91
1x7pB-2gupA:
21.91
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2B60_B_RITB100_2
(GAG-POL POLYPROTEIN)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
5 / 11 ALA A 101
ASP A 100
GLY A 232
ILE A 123
ALA A 119
None
TRS  A 293 (-2.8A)
SUC  A 290 (-3.2A)
None
None
0.95A 2b60B-2gupA:
undetectable
2b60B-2gupA:
18.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2B7Z_B_MK1B200_1
(HIV-1 PROTEASE)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
5 / 12 ALA A 101
ASP A 100
GLY A 232
ILE A 123
ALA A 119
None
TRS  A 293 (-2.8A)
SUC  A 290 (-3.2A)
None
None
0.99A 2b7zA-2gupA:
undetectable
2b7zA-2gupA:
15.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2BJF_A_DXCA330_0
(CHOLOYLGLYCINE
HYDROLASE)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
5 / 12 CYH A 103
ALA A  56
ASN A 274
ILE A  30
LEU A 275
None
None
SUC  A 290 (-2.8A)
None
None
1.21A 2bjfA-2gupA:
undetectable
2bjfA-2gupA:
21.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2GSS_A_EAAA0_1
(GLUTATHIONE
S-TRANSFERASE P1-1)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
4 / 8 TYR A  78
VAL A  76
ILE A  30
GLY A   9
None
0.84A 2gssA-2gupA:
undetectable
2gssA-2gupA:
21.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2GSS_B_EAAB0_1
(GLUTATHIONE
S-TRANSFERASE P1-1)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
4 / 8 TYR A  78
VAL A  76
ILE A  30
GLY A   9
None
0.85A 2gssB-2gupA:
undetectable
2gssB-2gupA:
21.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3A51_E_VDYE6178_1
(VITAMIN D
HYDROXYLASE)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
5 / 12 ILE A 264
ALA A 247
VAL A 252
PRO A 262
LEU A 217
None
1.18A 3a51E-2gupA:
undetectable
3a51E-2gupA:
21.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ADX_B_IMNB3_1
(PEROXISOME
PROLIFERATOR-ACTIVAT
ED RECEPTOR GAMMA)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
5 / 12 GLY A 231
ILE A 219
LEU A 216
VAL A 244
ILE A 241
SUC  A 290 ( 4.5A)
None
None
None
None
0.97A 3adxB-2gupA:
undetectable
3adxB-2gupA:
23.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ADX_B_IMNB3_1
(PEROXISOME
PROLIFERATOR-ACTIVAT
ED RECEPTOR GAMMA)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
6 / 12 LEU A  43
GLY A  81
SER A  83
LEU A  97
VAL A  59
ILE A  79
None
1.21A 3adxB-2gupA:
undetectable
3adxB-2gupA:
23.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3DOU_A_SAMA1_0
(RIBOSOMAL RNA LARGE
SUBUNIT
METHYLTRANSFERASE J)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
5 / 12 ALA A 266
SER A 233
GLY A 232
GLY A 231
ILE A 190
None
SUC  A 291 (-2.7A)
SUC  A 290 (-3.2A)
SUC  A 290 ( 4.5A)
None
0.91A 3douA-2gupA:
undetectable
3douA-2gupA:
18.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3G9E_A_RO7A1_1
(PEROXISOME
PROLIFERATOR-ACTIVAT
ED RECEPTOR GAMMA)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
5 / 12 GLY A  81
SER A  83
LEU A  97
VAL A  59
ILE A  79
None
1.18A 3g9eA-2gupA:
undetectable
3g9eA-2gupA:
24.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3GSS_A_EAAA212_1
(GLUTATHIONE
S-TRANSFERASE P1-1)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
4 / 7 TYR A  78
VAL A  76
ILE A  30
GLY A   9
None
0.82A 3gssA-2gupA:
undetectable
3gssA-2gupA:
21.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3GSS_B_EAAB211_1
(GLUTATHIONE
S-TRANSFERASE P1-1)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
4 / 7 TYR A  78
VAL A  76
ILE A  30
GLY A   9
None
0.82A 3gssB-2gupA:
undetectable
3gssB-2gupA:
21.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3N9J_A_EAAA210_1
(GLUTATHIONE
S-TRANSFERASE P)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
4 / 8 TYR A  78
VAL A  76
ILE A  30
GLY A   9
None
0.81A 3n9jA-2gupA:
undetectable
3n9jA-2gupA:
21.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3OXC_A_ROCA401_3
(PROTEASE)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
5 / 12 LEU A 283
GLY A 277
ALA A 278
ILE A   6
ILE A  24
None
1.03A 3oxcB-2gupA:
undetectable
3oxcB-2gupA:
15.86
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3OXV_B_478B200_2
(HIV-1 PROTEASE)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
5 / 10 ALA A 119
VAL A 227
GLY A 105
VAL A 104
ILE A 228
None
None
None
SUC  A 290 (-4.7A)
None
1.08A 3oxvB-2gupA:
undetectable
3oxvB-2gupA:
16.55
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3SO9_A_017A100_1
(HIV-1 PROTEASE)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
5 / 8 GLY A 129
ALA A 101
ASP A 100
GLY A 124
ILE A 123
None
None
TRS  A 293 (-2.8A)
None
None
1.17A 3so9A-2gupA:
undetectable
3so9A-2gupA:
16.44
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4JLT_A_8PRA505_1
(CYTOCHROME P450 2B4)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
4 / 8 ILE A 234
ILE A 190
ALA A 204
VAL A 244
None
0.76A 4jltA-2gupA:
undetectable
4jltA-2gupA:
19.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4KOE_H_TR6H101_1
(DNA TOPOISOMERASE 4
SUBUNIT A
DNA TOPOISOMERASE 4
SUBUNIT B
E-SITE DNA4)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
4 / 7 SER A 235
ASP A 100
GLY A 129
GLU A 147
None
TRS  A 293 (-2.8A)
None
None
0.69A 4koeA-2gupA:
undetectable
4koeB-2gupA:
undetectable
4koeD-2gupA:
2.5
4koeA-2gupA:
20.76
4koeB-2gupA:
20.76
4koeD-2gupA:
18.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4OBW_C_SAMC601_0
(2-METHOXY-6-POLYPREN
YL-1,4-BENZOQUINOL
METHYLASE,
MITOCHONDRIAL)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
5 / 12 GLY A 105
SER A 107
GLY A 146
SER A 229
PHE A 148
None
1.16A 4obwC-2gupA:
undetectable
4obwC-2gupA:
21.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4OQR_A_2UOA502_1
(CYP105AS1)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
5 / 9 VAL A 104
ILE A  70
VAL A  63
ALA A  62
ALA A 101
SUC  A 290 (-4.7A)
None
None
None
None
1.14A 4oqrA-2gupA:
undetectable
4oqrA-2gupA:
20.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4XUM_B_IMNB501_1
(PEROXISOME
PROLIFERATOR-ACTIVAT
ED RECEPTOR GAMMA)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
5 / 11 GLY A 231
ALA A 119
ILE A 219
LEU A 216
ILE A 241
SUC  A 290 ( 4.5A)
None
None
None
None
1.15A 4xumB-2gupA:
undetectable
4xumB-2gupA:
24.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4Z53_H_TR6H101_1
(DNA TOPOISOMERASE 4
SUBUNIT B,DNA
TOPOISOMERASE 4
SUBUNIT A
E-SITE DNA)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
4 / 7 ASP A 100
GLY A 129
GLU A 147
SER A 235
TRS  A 293 (-2.8A)
None
None
None
0.69A 4z53A-2gupA:
undetectable
4z53B-2gupA:
undetectable
4z53A-2gupA:
17.98
4z53B-2gupA:
17.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5CDQ_F_MFXF2101_1
(DNA GYRASE SUBUNIT A
DNA GYRASE SUBUNIT
B,DNA GYRASE SUBUNIT
B)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
4 / 6 SER A 235
ASP A 100
GLY A 129
GLU A 147
None
TRS  A 293 (-2.8A)
None
None
0.92A 5cdqA-2gupA:
undetectable
5cdqC-2gupA:
undetectable
5cdqD-2gupA:
undetectable
5cdqA-2gupA:
21.69
5cdqC-2gupA:
21.69
5cdqD-2gupA:
24.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5FPD_B_PZAB1385_0
(HEAT SHOCK-RELATED
70KDA PROTEIN 2)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
4 / 7 ASN A 274
VAL A 104
GLY A 128
VAL A 122
SUC  A 290 (-2.8A)
SUC  A 290 (-4.7A)
None
None
0.80A 5fpdB-2gupA:
10.6
5fpdB-2gupA:
22.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5HI2_A_BAXA801_2
(SERINE/THREONINE-PRO
TEIN KINASE B-RAF)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
5 / 8 ILE A 177
VAL A 176
VAL A 244
ILE A 123
ILE A 127
None
1.39A 5hi2A-2gupA:
undetectable
5hi2A-2gupA:
21.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5MUE_A_VIVA302_0
(ALPHA-TOCOPHEROL
TRANSFER PROTEIN)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
5 / 12 ILE A   8
PHE A  82
LEU A  97
VAL A  59
ILE A  70
None
0.99A 5mueA-2gupA:
undetectable
5mueA-2gupA:
19.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5YCN_A_8LXA501_0
(PEROXISOME
PROLIFERATOR-ACTIVAT
ED RECEPTOR GAMMA)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
5 / 12 ILE A 234
GLY A 231
LEU A 216
VAL A 244
ILE A 241
None
SUC  A 290 ( 4.5A)
None
None
None
1.03A 5ycnA-2gupA:
undetectable
5ycnA-2gupA:
23.78
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ZGB_B_PQNB844_1
(PSAB)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
5 / 9 ILE A 241
MET A 151
ALA A 213
LEU A 212
ALA A 167
None
1.21A 5zgbB-2gupA:
undetectable
5zgbB-2gupA:
15.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6DWN_B_AQ4B602_1
(CYTOCHROME P450 1A1)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
4 / 7 SER A  74
ASN A 102
VAL A  95
LEU A  97
None
None
SUC  A 292 (-4.1A)
None
0.80A 6dwnB-2gupA:
undetectable
6dwnB-2gupA:
12.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6GIQ_I_PCFI101_0
(CYTOCHROME B-C1
COMPLEX SUBUNIT 1,
MITOCHONDRIAL
CYTOCHROME B-C1
COMPLEX SUBUNIT 9
CYTOCHROME B-C1
COMPLEX SUBUNIT
RIESKE,
MITOCHONDRIAL)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
5 / 9 ASP A   7
SER A  58
GLY A 126
SER A 164
ASN A  99
SUC  A 290 (-3.5A)
None
None
None
TRS  A 293 (-3.9A)
1.47A 6giqA-2gupA:
0.0
6giqE-2gupA:
0.0
6giqI-2gupA:
0.0
6giqA-2gupA:
23.64
6giqE-2gupA:
21.68
6giqI-2gupA:
13.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6HU9_H_PCFH604_0
(CYTOCHROME B-C1
COMPLEX SUBUNIT 8
CYTOCHROME C OXIDASE
POLYPEPTIDE 5A,
MITOCHONDRIAL)
2gup ROK FAMILY PROTEIN
(Streptococcus
pneumoniae)
5 / 8 GLY A 231
HIS A 270
GLY A 277
SER A 107
ALA A 111
SUC  A 290 ( 4.5A)
SUC  A 290 ( 3.9A)
None
None
None
1.21A 6hu9H-2gupA:
undetectable
6hu9e-2gupA:
undetectable
6hu9H-2gupA:
16.44
6hu9e-2gupA:
17.93