SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '2kbf'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1P91_B_SAMB2401_0
(RIBOSOMAL RNA LARGE
SUBUNIT
METHYLTRANSFERASE A)
2kbf ATP-DEPENDENT RNA
HELICASE DBP5

(Saccharomyces
cerevisiae)
5 / 12 TYR A 325
LEU A 324
GLY A 434
ILE A 437
LEU A 350
None
1.11A 1p91B-2kbfA:
undetectable
1p91B-2kbfA:
21.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1RA8_A_FOLA161_0
(DIHYDROFOLATE
REDUCTASE)
2kbf ATP-DEPENDENT RNA
HELICASE DBP5

(Saccharomyces
cerevisiae)
6 / 12 ILE A 335
ALA A 436
THR A 398
ILE A 394
LEU A 390
ILE A 334
None
1.45A 1ra8A-2kbfA:
undetectable
1ra8A-2kbfA:
22.50
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1RX7_A_FOLA161_0
(DIHYDROFOLATE
REDUCTASE)
2kbf ATP-DEPENDENT RNA
HELICASE DBP5

(Saccharomyces
cerevisiae)
6 / 12 ALA A 436
LEU A 321
THR A 386
ILE A 385
LEU A 350
ILE A 334
None
1.30A 1rx7A-2kbfA:
undetectable
1rx7A-2kbfA:
22.50
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1UWJ_B_BAXB1723_2
(B-RAF PROTO-ONCOGENE
SERINE/THREONINE-PRO
TEIN KINASE)
2kbf ATP-DEPENDENT RNA
HELICASE DBP5

(Saccharomyces
cerevisiae)
3 / 3 ILE A 475
ASP A 310
PHE A 439
None
0.54A 1uwjB-2kbfA:
undetectable
1uwjB-2kbfA:
22.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2C12_C_SPMC1434_1
(NITROALKANE OXIDASE)
2kbf ATP-DEPENDENT RNA
HELICASE DBP5

(Saccharomyces
cerevisiae)
5 / 12 LEU A 390
ALA A 343
LEU A 346
LEU A 384
VAL A 383
None
1.16A 2c12C-2kbfA:
undetectable
2c12C-2kbfA:
19.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3TQB_A_FOLA2001_0
(DIHYDROFOLATE
REDUCTASE)
2kbf ATP-DEPENDENT RNA
HELICASE DBP5

(Saccharomyces
cerevisiae)
6 / 11 ALA A 436
LEU A 321
THR A 386
ILE A 385
LEU A 350
ILE A 334
None
1.32A 3tqbA-2kbfA:
undetectable
3tqbA-2kbfA:
20.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3TWP_A_SALA404_1
(ANTHRANILATE
PHOSPHORIBOSYLTRANSF
ERASE)
2kbf ATP-DEPENDENT RNA
HELICASE DBP5

(Saccharomyces
cerevisiae)
4 / 7 ASN A 388
ALA A 338
PRO A 408
ALA A 411
None
0.91A 3twpA-2kbfA:
2.0
3twpA-2kbfA:
18.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3TWP_B_SALB404_1
(ANTHRANILATE
PHOSPHORIBOSYLTRANSF
ERASE)
2kbf ATP-DEPENDENT RNA
HELICASE DBP5

(Saccharomyces
cerevisiae)
4 / 7 ASN A 388
ALA A 338
PRO A 408
ALA A 411
None
0.93A 3twpB-2kbfA:
undetectable
3twpB-2kbfA:
18.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3TWP_C_SALC404_1
(ANTHRANILATE
PHOSPHORIBOSYLTRANSF
ERASE)
2kbf ATP-DEPENDENT RNA
HELICASE DBP5

(Saccharomyces
cerevisiae)
4 / 7 ASN A 388
ALA A 338
PRO A 408
ALA A 411
None
0.94A 3twpC-2kbfA:
undetectable
3twpC-2kbfA:
18.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3TWP_D_SALD404_1
(ANTHRANILATE
PHOSPHORIBOSYLTRANSF
ERASE)
2kbf ATP-DEPENDENT RNA
HELICASE DBP5

(Saccharomyces
cerevisiae)
4 / 5 ASN A 388
ALA A 338
PRO A 408
ALA A 411
None
0.91A 3twpD-2kbfA:
undetectable
3twpD-2kbfA:
18.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4FHB_A_FOLA201_0
(DIHYDROFOLATE
REDUCTASE)
2kbf ATP-DEPENDENT RNA
HELICASE DBP5

(Saccharomyces
cerevisiae)
6 / 12 ILE A 335
ALA A 436
THR A 398
ILE A 394
LEU A 390
ILE A 334
None
1.44A 4fhbA-2kbfA:
undetectable
4fhbA-2kbfA:
22.50
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4I13_A_FOLA201_0
(DIHYDROFOLATE
REDUCTASE)
2kbf ATP-DEPENDENT RNA
HELICASE DBP5

(Saccharomyces
cerevisiae)
6 / 12 ILE A 335
ALA A 436
THR A 398
ILE A 394
LEU A 390
ILE A 334
None
1.41A 4i13A-2kbfA:
undetectable
4i13A-2kbfA:
22.50
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4KJK_A_FOLA201_0
(DIHYDROFOLATE
REDUCTASE)
2kbf ATP-DEPENDENT RNA
HELICASE DBP5

(Saccharomyces
cerevisiae)
6 / 12 ILE A 335
ALA A 436
THR A 398
ILE A 394
LEU A 390
ILE A 334
None
1.48A 4kjkA-2kbfA:
undetectable
4kjkA-2kbfA:
22.50
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4KJL_A_FOLA201_0
(DIHYDROFOLATE
REDUCTASE)
2kbf ATP-DEPENDENT RNA
HELICASE DBP5

(Saccharomyces
cerevisiae)
6 / 12 ILE A 335
ALA A 436
THR A 398
ILE A 394
LEU A 390
ILE A 334
None
1.42A 4kjlA-2kbfA:
undetectable
4kjlA-2kbfA:
24.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4P3Q_A_FOLA201_0
(DIHYDROFOLATE
REDUCTASE)
2kbf ATP-DEPENDENT RNA
HELICASE DBP5

(Saccharomyces
cerevisiae)
6 / 12 ILE A 335
ALA A 436
THR A 398
ILE A 394
LEU A 390
ILE A 334
None
1.46A 4p3qA-2kbfA:
undetectable
4p3qA-2kbfA:
22.50
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4PSS_A_FOLA201_0
(DIHYDROFOLATE
REDUCTASE)
2kbf ATP-DEPENDENT RNA
HELICASE DBP5

(Saccharomyces
cerevisiae)
6 / 12 ILE A 335
ALA A 436
THR A 398
ILE A 394
LEU A 390
ILE A 334
None
1.45A 4pssA-2kbfA:
undetectable
4pssA-2kbfA:
22.50
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4WNU_C_QDNC602_1
(CYTOCHROME P450 2D6)
2kbf ATP-DEPENDENT RNA
HELICASE DBP5

(Saccharomyces
cerevisiae)
5 / 11 GLY A 348
LEU A 350
GLU A 353
ALA A 315
ASP A 316
None
1.23A 4wnuC-2kbfA:
undetectable
4wnuC-2kbfA:
16.08