SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '2vha'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1N13_F_AG2F7016_1
(PYRUVOYL-DEPENDENT
ARGININE
DECARBOXYLASE BETA
CHAIN
PYRUVOYL-DEPENDENT
ARGININE
DECARBOXYLASE ALPHA
CHAIN)		 2vha PERIPLASMIC BINDING
TRANSPORT PROTEIN
(Shigella
flexneri) 		4 / 8 LEU A 215
GLY A  89
ILE A 107
MET A 226
 None
 0.91A 1n13A-2vhaA:
undetectable
1n13F-2vhaA:
undetectable		 1n13A-2vhaA:
10.27
1n13F-2vhaA:
16.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1TUF_A_AZ1A502_1
(DIAMINOPIMELATE
DECARBOXYLASE)		 2vha PERIPLASMIC BINDING
TRANSPORT PROTEIN
(Shigella
flexneri) 		5 / 9 GLY A 138
SER A  72
ARG A  24
TYR A 211
SER A 141
 None
GLU  A1280 (-2.7A)
GLU  A1280 (-3.0A)
GLU  A1280 (-4.7A)
None
 1.30A 1tufA-2vhaA:
undetectable
1tufB-2vhaA:
undetectable		 1tufA-2vhaA:
21.58
1tufB-2vhaA:
21.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2BXE_B_1FLB2003_1
(SERUM ALBUMIN)		 2vha PERIPLASMIC BINDING
TRANSPORT PROTEIN
(Shigella
flexneri) 		5 / 10 LEU A  10
PHE A 222
LEU A  63
ILE A  19
ALA A  53
 None
 1.13A 2bxeB-2vhaA:
undetectable		 2bxeB-2vhaA:
17.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2BXP_A_P1ZA3001_1
(SERUM ALBUMIN)		 2vha PERIPLASMIC BINDING
TRANSPORT PROTEIN
(Shigella
flexneri) 		5 / 12 LEU A  10
PHE A 222
LEU A  63
ILE A  19
ALA A  53
 None
 1.10A 2bxpA-2vhaA:
undetectable		 2bxpA-2vhaA:
17.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2BXQ_A_P1ZA2002_1
(SERUM ALBUMIN)		 2vha PERIPLASMIC BINDING
TRANSPORT PROTEIN
(Shigella
flexneri) 		6 / 12 LEU A  10
PHE A 222
LEU A  58
LEU A  63
ILE A  19
ALA A  53
 None
 1.28A 2bxqA-2vhaA:
undetectable		 2bxqA-2vhaA:
17.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2QQD_B_AG2B671_1
(PYRUVOYL-DEPENDENT
ARGININE
DECARBOXYLASE (EC
4.1.1.19) (PVLARGDC))		 2vha PERIPLASMIC BINDING
TRANSPORT PROTEIN
(Shigella
flexneri) 		4 / 8 ILE A 107
MET A 226
LEU A 215
GLY A  89
 None
 0.91A 2qqdB-2vhaA:
undetectable
2qqdC-2vhaA:
undetectable		 2qqdB-2vhaA:
17.44
2qqdC-2vhaA:
19.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3AF3_A_PAUA314_0
(PANTOTHENATE KINASE)		 2vha PERIPLASMIC BINDING
TRANSPORT PROTEIN
(Shigella
flexneri) 		4 / 6 TYR A 211
PHE A 108
PHE A 247
PHE A 260
 GLU  A1280 (-4.7A)
None
None
None
 1.06A 3af3A-2vhaA:
undetectable		 3af3A-2vhaA:
19.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3SUE_D_SUED1201_2
(NS3 PROTEASE, NS4A
PROTEIN)		 2vha PERIPLASMIC BINDING
TRANSPORT PROTEIN
(Shigella
flexneri) 		3 / 3 TYR A  46
LEU A  58
LYS A  56
 None
 0.78A 3sueD-2vhaA:
undetectable		 3sueD-2vhaA:
21.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3V4T_A_ACTA505_0
(UDP-N-ACETYLGLUCOSAM
INE
1-CARBOXYVINYLTRANSF
ERASE)		 2vha PERIPLASMIC BINDING
TRANSPORT PROTEIN
(Shigella
flexneri) 		3 / 3 THR A  92
ASN A  94
GLU A 209
 GLU  A1280 (-4.0A)
None
None
 0.82A 3v4tA-2vhaA:
undetectable
3v4tC-2vhaA:
undetectable		 3v4tA-2vhaA:
21.36
3v4tC-2vhaA:
21.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4O1E_A_C2FA3000_1
(DIHYDROPTEROATE
SYNTHASE DHPS)		 2vha PERIPLASMIC BINDING
TRANSPORT PROTEIN
(Shigella
flexneri) 		3 / 3 LYS A 267
ASN A 274
ASP A 264
 None
 0.62A 4o1eA-2vhaA:
undetectable		 4o1eA-2vhaA:
23.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4O4D_A_ACTA406_0
(INOSITOL
HEXAKISPHOSPHATE
KINASE)		 2vha PERIPLASMIC BINDING
TRANSPORT PROTEIN
(Shigella
flexneri) 		4 / 7 THR A  91
ARG A  24
PHE A  30
SER A  27
 GLU  A1280 (-4.4A)
GLU  A1280 (-3.0A)
None
GLU  A1280 ( 4.0A)
 1.39A 4o4dA-2vhaA:
undetectable		 4o4dA-2vhaA:
23.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4O8Z_A_BBIA402_1
(NAD-DEPENDENT
PROTEIN DEACETYLASE
SIRTUIN-3,
MITOCHONDRIAL)		 2vha PERIPLASMIC BINDING
TRANSPORT PROTEIN
(Shigella
flexneri) 		4 / 5 PHE A 247
PHE A 260
LEU A 256
PRO A 196
 None
 1.33A 4o8zA-2vhaA:
undetectable		 4o8zA-2vhaA:
21.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5AOX_C_ACTC1001_0
(ALU JO CONSENSUS RNA
SIGNAL RECOGNITION
PARTICLE 14 KDA
PROTEIN)		 2vha PERIPLASMIC BINDING
TRANSPORT PROTEIN
(Shigella
flexneri) 		3 / 3 TYR A 211
THR A 106
THR A  92
 GLU  A1280 (-4.7A)
None
GLU  A1280 (-4.0A)
 0.70A 5aoxB-2vhaA:
undetectable		 5aoxB-2vhaA:
17.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5AOX_F_ACTF1001_0
(ALU JO CONSENSUS RNA
SIGNAL RECOGNITION
PARTICLE 14 KDA
PROTEIN)		 2vha PERIPLASMIC BINDING
TRANSPORT PROTEIN
(Shigella
flexneri) 		3 / 3 TYR A 211
THR A 106
THR A  92
 GLU  A1280 (-4.7A)
None
GLU  A1280 (-4.0A)
 0.74A 5aoxE-2vhaA:
undetectable		 5aoxE-2vhaA:
17.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ESH_A_1YNA602_2
(LANOSTEROL 14-ALPHA
DEMETHYLASE)		 2vha PERIPLASMIC BINDING
TRANSPORT PROTEIN
(Shigella
flexneri) 		4 / 5 TYR A  46
TRP A 246
LEU A 262
LEU A 269
 None
 1.28A 5eshA-2vhaA:
undetectable		 5eshA-2vhaA:
20.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5VLM_F_CVIF301_1
(REGULATORY PROTEIN
TETR)		 2vha PERIPLASMIC BINDING
TRANSPORT PROTEIN
(Shigella
flexneri) 		4 / 8 ILE A 107
GLN A  44
TRP A 242
ASP A 227
 None
None
None
TRS  A1281 (-3.4A)
 1.03A 5vlmF-2vhaA:
undetectable		 5vlmF-2vhaA:
20.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6FGC_A_ACTA813_0
(GEPHYRIN)		 2vha PERIPLASMIC BINDING
TRANSPORT PROTEIN
(Shigella
flexneri) 		3 / 3 THR A 229
ALA A  53
LYS A  55
 None
 0.62A 6fgcA-2vhaA:
2.4		 6fgcA-2vhaA:
20.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6FGD_A_ACTA817_0
(GEPHYRIN)		 2vha PERIPLASMIC BINDING
TRANSPORT PROTEIN
(Shigella
flexneri) 		3 / 3 THR A 229
ALA A  53
LYS A  55
 None
 0.62A 6fgdA-2vhaA:
2.5		 6fgdA-2vhaA:
20.88