SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '2ymv'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1R9O_A_FLPA501_1
(CYTOCHROME P450 2C9)		 2ymv ACG NITROREDUCTASE
(Mycolicibacteriu
m
smegmatis) 		5 / 12 VAL A 213
ILE A 285
LEU A 289
ALA A 167
LEU A 299
 None
 1.08A 1r9oA-2ymvA:
undetectable		 1r9oA-2ymvA:
21.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2W8Y_A_486A1000_1
(PROGESTERONE
RECEPTOR)		 2ymv ACG NITROREDUCTASE
(Mycolicibacteriu
m
smegmatis) 		5 / 12 LEU A 260
LEU A 268
GLY A 303
LEU A 239
VAL A 211
 None
 1.41A 2w8yA-2ymvA:
undetectable		 2w8yA-2ymvA:
21.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2WX2_A_TPFA1460_1
(LANOSTEROL
14-ALPHA-DEMETHYLASE)		 2ymv ACG NITROREDUCTASE
(Mycolicibacteriu
m
smegmatis) 		4 / 7 ALA A  19
ALA A  15
THR A  11
LEU A   7
 None
 0.96A 2wx2A-2ymvA:
undetectable		 2wx2A-2ymvA:
22.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2WX2_B_TPFB1460_1
(LANOSTEROL
14-ALPHA-DEMETHYLASE)		 2ymv ACG NITROREDUCTASE
(Mycolicibacteriu
m
smegmatis) 		4 / 8 ALA A  19
ALA A  15
THR A  11
LEU A   7
 None
 0.98A 2wx2B-2ymvA:
undetectable		 2wx2B-2ymvA:
22.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3KHM_A_TPFA501_1
(STEROL 14
ALPHA-DEMETHYLASE)		 2ymv ACG NITROREDUCTASE
(Mycolicibacteriu
m
smegmatis) 		4 / 8 ALA A  19
ALA A  15
THR A  11
LEU A   7
 None
 0.95A 3khmA-2ymvA:
undetectable		 3khmA-2ymvA:
21.91
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3L4D_A_TPFA490_1
(STEROL 14-ALPHA
DEMETHYLASE)		 2ymv ACG NITROREDUCTASE
(Mycolicibacteriu
m
smegmatis) 		4 / 8 ALA A  19
ALA A  15
THR A  11
LEU A   7
 None
 0.98A 3l4dA-2ymvA:
undetectable		 3l4dA-2ymvA:
20.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4EYR_B_RITB301_2
(HIV-1 PROTEASE)		 2ymv ACG NITROREDUCTASE
(Mycolicibacteriu
m
smegmatis) 		5 / 8 GLY A 253
ALA A 252
ASP A 251
ASP A 248
THR A 274
 None
None
None
None
FNR  A1330 (-3.2A)
 1.44A 4eyrB-2ymvA:
undetectable		 4eyrB-2ymvA:
15.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4EYR_B_RITB301_2
(HIV-1 PROTEASE)		 2ymv ACG NITROREDUCTASE
(Mycolicibacteriu
m
smegmatis) 		5 / 8 GLY A 253
ALA A 252
ASP A 251
ASP A 248
THR A 277
 None
 1.36A 4eyrB-2ymvA:
undetectable		 4eyrB-2ymvA:
15.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4FP9_C_SAMC401_1
(METHYLTRANSFERASE
NSUN4)		 2ymv ACG NITROREDUCTASE
(Mycolicibacteriu
m
smegmatis) 		3 / 3 ASP A 251
ARG A  86
ASP A 242
 None
FMT  A1333 (-2.9A)
None
 0.82A 4fp9C-2ymvA:
undetectable		 4fp9C-2ymvA:
22.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4FP9_F_SAMF401_1
(METHYLTRANSFERASE
NSUN4)		 2ymv ACG NITROREDUCTASE
(Mycolicibacteriu
m
smegmatis) 		3 / 3 ASP A 251
ARG A  86
ASP A 242
 None
FMT  A1333 (-2.9A)
None
 0.83A 4fp9F-2ymvA:
undetectable		 4fp9F-2ymvA:
22.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4NKX_C_STRC601_2
(STEROID
17-ALPHA-HYDROXYLASE
/17,20 LYASE)		 2ymv ACG NITROREDUCTASE
(Mycolicibacteriu
m
smegmatis) 		4 / 5 ILE A 285
ASP A 153
GLU A 162
VAL A 213
 None
 1.21A 4nkxC-2ymvA:
undetectable		 4nkxC-2ymvA:
21.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4NKX_D_STRD601_2
(STEROID
17-ALPHA-HYDROXYLASE
/17,20 LYASE)		 2ymv ACG NITROREDUCTASE
(Mycolicibacteriu
m
smegmatis) 		4 / 5 ILE A 285
ASP A 153
GLU A 162
VAL A 213
 None
 1.22A 4nkxD-2ymvA:
undetectable		 4nkxD-2ymvA:
21.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4PGF_A_ADNA502_1
(ADENOSYLHOMOCYSTEINA
SE)		 2ymv ACG NITROREDUCTASE
(Mycolicibacteriu
m
smegmatis) 		5 / 12 LEU A  25
ASP A  54
GLU A  59
LEU A  44
GLY A  65
 FNR  A1330 (-4.1A)
None
FNR  A1330 (-4.5A)
None
None
 1.50A 4pgfA-2ymvA:
undetectable		 4pgfA-2ymvA:
21.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5EML_A_SAMA701_0
(PROTEIN ARGININE
N-METHYLTRANSFERASE
5)		 2ymv ACG NITROREDUCTASE
(Mycolicibacteriu
m
smegmatis) 		5 / 12 PRO A  30
LEU A  44
PRO A 272
LEU A 256
ARG A 246
 None
None
FNR  A1330 (-4.5A)
None
None
 1.39A 5emlA-2ymvA:
undetectable		 5emlA-2ymvA:
19.05
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5IGP_A_ERYA402_0
(MACROLIDE
2'-PHOSPHOTRANSFERAS
E)		 2ymv ACG NITROREDUCTASE
(Mycolicibacteriu
m
smegmatis) 		5 / 12 ILE A 290
PRO A 296
ALA A 168
ALA A 167
VAL A 276
 None
 1.33A 5igpA-2ymvA:
undetectable		 5igpA-2ymvA:
24.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5JNC_D_ACTD305_0
(CARBONIC ANHYDRASE 4)		 2ymv ACG NITROREDUCTASE
(Mycolicibacteriu
m
smegmatis) 		4 / 5 ALA A  19
ALA A  74
ILE A 118
LEU A 119
 None
 0.81A 5jncD-2ymvA:
undetectable		 5jncD-2ymvA:
20.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5KGP_A_GCSA407_1
(PREDICTED
ACETYLTRANSFERASE)		 2ymv ACG NITROREDUCTASE
(Mycolicibacteriu
m
smegmatis) 		4 / 8 ARG A  86
GLU A 254
GLY A 148
PRO A 149
 FMT  A1333 (-2.9A)
None
None
None
 0.96A 5kgpA-2ymvA:
undetectable		 5kgpA-2ymvA:
18.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5KGP_B_GCSB405_1
(PREDICTED
ACETYLTRANSFERASE)		 2ymv ACG NITROREDUCTASE
(Mycolicibacteriu
m
smegmatis) 		4 / 8 ARG A  86
GLU A 254
GLY A 148
PRO A 149
 FMT  A1333 (-2.9A)
None
None
None
 0.93A 5kgpB-2ymvA:
undetectable		 5kgpB-2ymvA:
18.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5WWS_A_SAMA501_0
(PUTATIVE
METHYLTRANSFERASE
NSUN6)		 2ymv ACG NITROREDUCTASE
(Mycolicibacteriu
m
smegmatis) 		5 / 12 ALA A 212
ASP A 158
GLY A 156
LEU A 289
LEU A 155
 None
 1.11A 5wwsA-2ymvA:
undetectable		 5wwsA-2ymvA:
20.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5X2S_I_PEMI202_1
(HEMOGLOBIN SUBUNIT
ALPHA
HEMOGLOBIN SUBUNIT
BETA)		 2ymv ACG NITROREDUCTASE
(Mycolicibacteriu
m
smegmatis) 		4 / 8 THR A 274
THR A 277
TRP A  31
PRO A  30
 FNR  A1330 (-3.2A)
None
None
None
 1.11A 5x2sI-2ymvA:
undetectable
5x2sJ-2ymvA:
undetectable
5x2sK-2ymvA:
undetectable		 5x2sI-2ymvA:
19.15
5x2sJ-2ymvA:
19.61
5x2sK-2ymvA:
19.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6APH_A_ADNA501_1
(ADENOSYLHOMOCYSTEINA
SE)		 2ymv ACG NITROREDUCTASE
(Mycolicibacteriu
m
smegmatis) 		5 / 12 LEU A  25
ASP A  54
GLU A  59
LEU A  44
GLY A  65
 FNR  A1330 (-4.1A)
None
FNR  A1330 (-4.5A)
None
None
 1.43A 6aphA-2ymvA:
undetectable		 6aphA-2ymvA:
20.44
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6BPL_B_PA1B605_1
(LIPID A EXPORT
ATP-BINDING/PERMEASE
PROTEIN MSBA)		 2ymv ACG NITROREDUCTASE
(Mycolicibacteriu
m
smegmatis) 		3 / 3 ARG A 125
ARG A 317
ARG A 122
 FNR  A1330 (-3.8A)
FNR  A1330 (-3.2A)
None
 0.98A 6bplA-2ymvA:
undetectable
6bplB-2ymvA:
undetectable		 6bplA-2ymvA:
15.52
6bplB-2ymvA:
15.52