SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '2ypd'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1HWI_A_115A2_2
(HMG-COA REDUCTASE)
2ypd PROBABLE JMJC
DOMAIN-CONTAINING
HISTONE
DEMETHYLATION PROT
EIN 2C

(Homo
sapiens)
4 / 8 ASN A2175
LEU A2170
ALA A2192
LEU A2168
None
0.78A 1hwiB-2ypdA:
undetectable
1hwiB-2ypdA:
22.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1HWI_C_115C4_2
(HMG-COA REDUCTASE)
2ypd PROBABLE JMJC
DOMAIN-CONTAINING
HISTONE
DEMETHYLATION PROT
EIN 2C

(Homo
sapiens)
4 / 8 ASN A2175
LEU A2170
ALA A2192
LEU A2168
None
0.78A 1hwiD-2ypdA:
undetectable
1hwiD-2ypdA:
22.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1HWI_D_115D3_1
(HMG-COA REDUCTASE)
2ypd PROBABLE JMJC
DOMAIN-CONTAINING
HISTONE
DEMETHYLATION PROT
EIN 2C

(Homo
sapiens)
4 / 8 ASN A2175
LEU A2170
ALA A2192
LEU A2168
None
0.78A 1hwiC-2ypdA:
undetectable
1hwiC-2ypdA:
22.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1KF6_N_ACTN803_0
(FUMARATE REDUCTASE
FLAVOPROTEIN
FUMARATE REDUCTASE
IRON-SULFUR PROTEIN)
2ypd PROBABLE JMJC
DOMAIN-CONTAINING
HISTONE
DEMETHYLATION PROT
EIN 2C

(Homo
sapiens)
4 / 6 TRP A2169
ARG A2379
GLY A2196
ASP A2456
None
1.26A 1kf6M-2ypdA:
undetectable
1kf6N-2ypdA:
undetectable
1kf6M-2ypdA:
20.30
1kf6N-2ypdA:
20.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1T88_A_CAMA1422_0
(CYTOCHROME P450-CAM)
2ypd PROBABLE JMJC
DOMAIN-CONTAINING
HISTONE
DEMETHYLATION PROT
EIN 2C

(Homo
sapiens)
4 / 7 PHE A2367
VAL A2349
GLY A2350
VAL A2323
None
1.01A 1t88A-2ypdA:
undetectable
1t88A-2ypdA:
23.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2J9D_J_ACTJ1116_0
(HYPOTHETICAL
NITROGEN REGULATORY
PII-LIKE PROTEIN
MJ0059)
2ypd PROBABLE JMJC
DOMAIN-CONTAINING
HISTONE
DEMETHYLATION PROT
EIN 2C

(Homo
sapiens)
4 / 8 LYS A2408
GLU A2412
ILE A2409
GLU A2442
None
0.78A 2j9dJ-2ypdA:
undetectable
2j9dK-2ypdA:
undetectable
2j9dL-2ypdA:
undetectable
2j9dJ-2ypdA:
18.11
2j9dK-2ypdA:
18.11
2j9dL-2ypdA:
18.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2J9D_J_ACTJ1116_0
(HYPOTHETICAL
NITROGEN REGULATORY
PII-LIKE PROTEIN
MJ0059)
2ypd PROBABLE JMJC
DOMAIN-CONTAINING
HISTONE
DEMETHYLATION PROT
EIN 2C

(Homo
sapiens)
4 / 8 LYS A2408
GLU A2412
ILE A2409
GLU A2442
None
0.80A 2j9dJ-2ypdA:
undetectable
2j9dK-2ypdA:
undetectable
2j9dL-2ypdA:
undetectable
2j9dJ-2ypdA:
18.11
2j9dK-2ypdA:
18.11
2j9dL-2ypdA:
18.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2NNI_A_MTKA501_2
(CYTOCHROME P450 2C8)
2ypd PROBABLE JMJC
DOMAIN-CONTAINING
HISTONE
DEMETHYLATION PROT
EIN 2C

(Homo
sapiens)
5 / 8 ILE A2424
ILE A2402
ILE A2409
ARG A2446
VAL A2445
None
None
None
EMT  A3498 ( 3.2A)
None
1.48A 2nniA-2ypdA:
undetectable
2nniA-2ypdA:
21.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3N23_A_OBNA1_1
(SODIUM/POTASSIUM-TRA
NSPORTING ATPASE
SUBUNIT ALPHA-1)
2ypd PROBABLE JMJC
DOMAIN-CONTAINING
HISTONE
DEMETHYLATION PROT
EIN 2C

(Homo
sapiens)
5 / 11 GLN A2476
ASN A2470
VAL A2323
PHE A2367
ARG A2379
EMT  A3503 (-4.8A)
None
None
None
None
1.33A 3n23A-2ypdA:
undetectable
3n23A-2ypdA:
16.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3N23_C_OBNC1_1
(SODIUM/POTASSIUM-TRA
NSPORTING ATPASE
SUBUNIT ALPHA-1)
2ypd PROBABLE JMJC
DOMAIN-CONTAINING
HISTONE
DEMETHYLATION PROT
EIN 2C

(Homo
sapiens)
5 / 11 GLN A2476
ASN A2470
VAL A2323
PHE A2367
ARG A2379
EMT  A3503 (-4.8A)
None
None
None
None
1.33A 3n23C-2ypdA:
undetectable
3n23C-2ypdA:
16.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3N8X_B_NIMB1701_2
(PROSTAGLANDIN G/H
SYNTHASE 1)
2ypd PROBABLE JMJC
DOMAIN-CONTAINING
HISTONE
DEMETHYLATION PROT
EIN 2C

(Homo
sapiens)
3 / 3 VAL A2477
VAL A2197
SER A2284
None
0.65A 3n8xB-2ypdA:
undetectable
3n8xB-2ypdA:
22.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4A99_D_MIYD393_1
(TETX2 PROTEIN)
2ypd PROBABLE JMJC
DOMAIN-CONTAINING
HISTONE
DEMETHYLATION PROT
EIN 2C

(Homo
sapiens)
4 / 5 ILE A2458
GLN A2452
ILE A2451
GLU A2370
None
1.09A 4a99D-2ypdA:
undetectable
4a99D-2ypdA:
23.44
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ACB_B_DXCB1473_0
(TRANSLATION
ELONGATION FACTOR
SELB)
2ypd PROBABLE JMJC
DOMAIN-CONTAINING
HISTONE
DEMETHYLATION PROT
EIN 2C

(Homo
sapiens)
4 / 8 ILE A2363
GLY A2362
VAL A2322
ARG A2436
None
0.71A 4acbB-2ypdA:
undetectable
4acbC-2ypdA:
undetectable
4acbB-2ypdA:
22.94
4acbC-2ypdA:
22.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4L9I_A_8PRA601_1
(RHODOPSIN KINASE)
2ypd PROBABLE JMJC
DOMAIN-CONTAINING
HISTONE
DEMETHYLATION PROT
EIN 2C

(Homo
sapiens)
4 / 7 VAL A2193
LEU A2460
ASP A2373
LEU A2376
None
0.75A 4l9iA-2ypdA:
undetectable
4l9iA-2ypdA:
21.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4MK4_B_CHDB502_0
(FERROCHELATASE,
MITOCHONDRIAL)
2ypd PROBABLE JMJC
DOMAIN-CONTAINING
HISTONE
DEMETHYLATION PROT
EIN 2C

(Homo
sapiens)
4 / 6 PHE A2367
ILE A2451
ARG A2379
VAL A2349
None
1.28A 4mk4B-2ypdA:
undetectable
4mk4B-2ypdA:
20.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4PWD_A_NVPA901_1
(HIV-1 REVERSE
TRANSCRIPTASE, P66
SUBUNIT)
2ypd PROBABLE JMJC
DOMAIN-CONTAINING
HISTONE
DEMETHYLATION PROT
EIN 2C

(Homo
sapiens)
4 / 8 LEU A2281
VAL A2197
VAL A2347
LEU A2285
None
0.89A 4pwdA-2ypdA:
undetectable
4pwdA-2ypdA:
23.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4TWD_C_377C401_1
(CYS-LOOP
LIGAND-GATED ION
CHANNEL)
2ypd PROBABLE JMJC
DOMAIN-CONTAINING
HISTONE
DEMETHYLATION PROT
EIN 2C

(Homo
sapiens)
4 / 6 ASN A2470
GLU A2243
TYR A2348
PHE A2242
None
1.18A 4twdB-2ypdA:
undetectable
4twdC-2ypdA:
undetectable
4twdB-2ypdA:
21.48
4twdC-2ypdA:
21.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4TWD_E_377E401_1
(CYS-LOOP
LIGAND-GATED ION
CHANNEL)
2ypd PROBABLE JMJC
DOMAIN-CONTAINING
HISTONE
DEMETHYLATION PROT
EIN 2C

(Homo
sapiens)
4 / 6 ASN A2470
GLU A2243
TYR A2348
PHE A2242
None
1.14A 4twdD-2ypdA:
undetectable
4twdE-2ypdA:
undetectable
4twdD-2ypdA:
21.48
4twdE-2ypdA:
21.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4TWD_H_377H401_1
(CYS-LOOP
LIGAND-GATED ION
CHANNEL)
2ypd PROBABLE JMJC
DOMAIN-CONTAINING
HISTONE
DEMETHYLATION PROT
EIN 2C

(Homo
sapiens)
4 / 6 ASN A2470
GLU A2243
TYR A2348
PHE A2242
None
1.18A 4twdG-2ypdA:
undetectable
4twdH-2ypdA:
undetectable
4twdG-2ypdA:
21.48
4twdH-2ypdA:
21.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5OSP_A_ACTA403_0
(CASEIN KINASE II
SUBUNIT ALPHA)
2ypd PROBABLE JMJC
DOMAIN-CONTAINING
HISTONE
DEMETHYLATION PROT
EIN 2C

(Homo
sapiens)
4 / 7 VAL A2343
ILE A2345
VAL A2194
ALA A2457
None
0.66A 5ospA-2ypdA:
undetectable
5ospA-2ypdA:
23.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6EBP_C_DAHC123_0
(RIBONUCLEOSIDE-DIPHO
SPHATE REDUCTASE,
BETA SUBUNIT)
2ypd PROBABLE JMJC
DOMAIN-CONTAINING
HISTONE
DEMETHYLATION PROT
EIN 2C

(Homo
sapiens)
5 / 10 PHE A2367
LEU A2380
GLY A2362
ILE A2363
PHE A2453
None
1.25A 6ebpC-2ypdA:
undetectable
6ebpC-2ypdA:
12.40