SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '3ckk'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1U70_A_MTXA187_2
(DIHYDROFOLATE
REDUCTASE)
3ckk TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE

(Homo
sapiens)
4 / 4 SER A 109
ILE A  78
VAL A  82
THR A 208
None
SAM  A 301 (-3.8A)
None
SAM  A 301 (-2.8A)
0.96A 1u70A-3ckkA:
undetectable
1u70A-3ckkA:
22.05
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2VDV_E_SAME1287_0
(TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE)
3ckk TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE

(Homo
sapiens)
5 / 12 GLY A  54
ARG A  79
ALA A 111
PHE A 131
GLU A 210
GOL  A 302 ( 3.3A)
SAM  A 301 (-3.8A)
SAM  A 301 (-3.7A)
SAM  A 301 (-4.8A)
SAM  A 301 (-4.1A)
1.26A 2vdvE-3ckkA:
29.6
2vdvE-3ckkA:
53.73
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2VDV_E_SAME1287_0
(TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE)
3ckk TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE

(Homo
sapiens)
7 / 12 GLY A  54
GLU A  77
ILE A  78
ARG A  79
ASN A 110
ALA A 111
PHE A 131
GOL  A 302 ( 3.3A)
SAM  A 301 (-2.7A)
SAM  A 301 (-3.8A)
SAM  A 301 (-3.8A)
SAM  A 301 (-3.5A)
SAM  A 301 (-3.7A)
SAM  A 301 (-4.8A)
0.91A 2vdvE-3ckkA:
29.6
2vdvE-3ckkA:
53.73
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2VDV_E_SAME1287_0
(TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE)
3ckk TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE

(Homo
sapiens)
7 / 12 GLY A  54
GLU A  77
ILE A  78
ARG A  79
ASN A 110
PHE A 131
ASP A 133
GOL  A 302 ( 3.3A)
SAM  A 301 (-2.7A)
SAM  A 301 (-3.8A)
SAM  A 301 (-3.8A)
SAM  A 301 (-3.5A)
SAM  A 301 (-4.8A)
GOL  A 302 ( 3.6A)
1.12A 2vdvE-3ckkA:
29.6
2vdvE-3ckkA:
53.73
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2VDV_E_SAME1287_0
(TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE)
3ckk TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE

(Homo
sapiens)
6 / 12 GLY A  54
GLY A  56
ALA A 111
PHE A 131
THR A 208
GLU A 210
GOL  A 302 ( 3.3A)
SAM  A 301 (-3.5A)
SAM  A 301 (-3.7A)
SAM  A 301 (-4.8A)
SAM  A 301 (-2.8A)
SAM  A 301 (-4.1A)
0.83A 2vdvE-3ckkA:
29.6
2vdvE-3ckkA:
53.73
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2VDV_E_SAME1287_0
(TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE)
3ckk TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE

(Homo
sapiens)
8 / 12 GLY A  54
GLY A  56
GLU A  77
ILE A  78
ASN A 110
ALA A 111
PHE A 131
THR A 208
GOL  A 302 ( 3.3A)
SAM  A 301 (-3.5A)
SAM  A 301 (-2.7A)
SAM  A 301 (-3.8A)
SAM  A 301 (-3.5A)
SAM  A 301 (-3.7A)
SAM  A 301 (-4.8A)
SAM  A 301 (-2.8A)
0.35A 2vdvE-3ckkA:
29.6
2vdvE-3ckkA:
53.73
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2VDV_E_SAME1287_0
(TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE)
3ckk TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE

(Homo
sapiens)
8 / 12 GLY A  54
GLY A  56
GLU A  77
ILE A  78
ASN A 110
PHE A 131
ASP A 133
THR A 208
GOL  A 302 ( 3.3A)
SAM  A 301 (-3.5A)
SAM  A 301 (-2.7A)
SAM  A 301 (-3.8A)
SAM  A 301 (-3.5A)
SAM  A 301 (-4.8A)
GOL  A 302 ( 3.6A)
SAM  A 301 (-2.8A)
0.69A 2vdvE-3ckkA:
29.6
2vdvE-3ckkA:
53.73
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2VDV_F_SAMF1287_0
(TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE)
3ckk TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE

(Homo
sapiens)
5 / 11 GLY A  54
ARG A  79
ALA A 111
PHE A 131
GLU A 210
GOL  A 302 ( 3.3A)
SAM  A 301 (-3.8A)
SAM  A 301 (-3.7A)
SAM  A 301 (-4.8A)
SAM  A 301 (-4.1A)
1.25A 2vdvF-3ckkA:
29.6
2vdvF-3ckkA:
53.73
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2VDV_F_SAMF1287_0
(TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE)
3ckk TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE

(Homo
sapiens)
7 / 11 GLY A  54
GLU A  77
ILE A  78
ARG A  79
ASN A 110
ALA A 111
PHE A 131
GOL  A 302 ( 3.3A)
SAM  A 301 (-2.7A)
SAM  A 301 (-3.8A)
SAM  A 301 (-3.8A)
SAM  A 301 (-3.5A)
SAM  A 301 (-3.7A)
SAM  A 301 (-4.8A)
0.91A 2vdvF-3ckkA:
29.6
2vdvF-3ckkA:
53.73
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2VDV_F_SAMF1287_0
(TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE)
3ckk TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE

(Homo
sapiens)
7 / 11 GLY A  54
GLU A  77
ILE A  78
ARG A  79
ASN A 110
PHE A 131
ASP A 133
GOL  A 302 ( 3.3A)
SAM  A 301 (-2.7A)
SAM  A 301 (-3.8A)
SAM  A 301 (-3.8A)
SAM  A 301 (-3.5A)
SAM  A 301 (-4.8A)
GOL  A 302 ( 3.6A)
1.12A 2vdvF-3ckkA:
29.6
2vdvF-3ckkA:
53.73
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2VDV_F_SAMF1287_0
(TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE)
3ckk TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE

(Homo
sapiens)
6 / 11 GLY A  54
GLY A  56
ALA A 111
PHE A 131
THR A 208
GLU A 210
GOL  A 302 ( 3.3A)
SAM  A 301 (-3.5A)
SAM  A 301 (-3.7A)
SAM  A 301 (-4.8A)
SAM  A 301 (-2.8A)
SAM  A 301 (-4.1A)
0.83A 2vdvF-3ckkA:
29.6
2vdvF-3ckkA:
53.73
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2VDV_F_SAMF1287_0
(TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE)
3ckk TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE

(Homo
sapiens)
8 / 11 GLY A  54
GLY A  56
GLU A  77
ILE A  78
ASN A 110
ALA A 111
PHE A 131
THR A 208
GOL  A 302 ( 3.3A)
SAM  A 301 (-3.5A)
SAM  A 301 (-2.7A)
SAM  A 301 (-3.8A)
SAM  A 301 (-3.5A)
SAM  A 301 (-3.7A)
SAM  A 301 (-4.8A)
SAM  A 301 (-2.8A)
0.35A 2vdvF-3ckkA:
29.6
2vdvF-3ckkA:
53.73
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2VDV_F_SAMF1287_0
(TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE)
3ckk TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE

(Homo
sapiens)
8 / 11 GLY A  54
GLY A  56
GLU A  77
ILE A  78
ASN A 110
PHE A 131
ASP A 133
THR A 208
GOL  A 302 ( 3.3A)
SAM  A 301 (-3.5A)
SAM  A 301 (-2.7A)
SAM  A 301 (-3.8A)
SAM  A 301 (-3.5A)
SAM  A 301 (-4.8A)
GOL  A 302 ( 3.6A)
SAM  A 301 (-2.8A)
0.69A 2vdvF-3ckkA:
29.6
2vdvF-3ckkA:
53.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ZZM_A_SAMA401_1
(UNCHARACTERIZED
PROTEIN MJ0883)
3ckk TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE

(Homo
sapiens)
3 / 3 ARG A 216
ASP A 169
ASN A 217
None
0.84A 2zzmA-3ckkA:
10.3
2zzmA-3ckkA:
22.32
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3CKK_A_SAMA301_0
(TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE)
3ckk TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE

(Homo
sapiens)
9 / 12 GLY A  54
GLY A  56
GLU A  77
ILE A  78
ARG A  79
ASN A 110
ALA A 111
LEU A  60
THR A 208
GOL  A 302 ( 3.3A)
SAM  A 301 (-3.5A)
SAM  A 301 (-2.7A)
SAM  A 301 (-3.8A)
SAM  A 301 (-3.8A)
SAM  A 301 (-3.5A)
SAM  A 301 (-3.7A)
None
SAM  A 301 (-2.8A)
1.34A 3ckkA-3ckkA:
39.0
3ckkA-3ckkA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3CKK_A_SAMA301_0
(TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE)
3ckk TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE

(Homo
sapiens)
12 / 12 GLY A  54
GLY A  56
GLU A  77
ILE A  78
ARG A  79
ASN A 110
ALA A 111
MET A 112
LEU A 130
ASP A 133
THR A 208
GLU A 210
GOL  A 302 ( 3.3A)
SAM  A 301 (-3.5A)
SAM  A 301 (-2.7A)
SAM  A 301 (-3.8A)
SAM  A 301 (-3.8A)
SAM  A 301 (-3.5A)
SAM  A 301 (-3.7A)
GOL  A 302 ( 3.3A)
SAM  A 301 (-4.8A)
GOL  A 302 ( 3.6A)
SAM  A 301 (-2.8A)
SAM  A 301 (-4.1A)
0.00A 3ckkA-3ckkA:
39.0
3ckkA-3ckkA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3DXY_A_SAMA1_0
(TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE)
3ckk TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE

(Homo
sapiens)
6 / 11 GLY A  54
GLY A  56
GLU A  77
ALA A 111
PHE A 131
ASP A 133
GOL  A 302 ( 3.3A)
SAM  A 301 (-3.5A)
SAM  A 301 (-2.7A)
SAM  A 301 (-3.7A)
SAM  A 301 (-4.8A)
GOL  A 302 ( 3.6A)
0.60A 3dxyA-3ckkA:
19.9
3dxyA-3ckkA:
24.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3MTE_B_SAMB220_0
(16S RRNA METHYLASE)
3ckk TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE

(Homo
sapiens)
5 / 12 GLY A  54
GLY A  56
ALA A 111
LEU A 130
PHE A 131
GOL  A 302 ( 3.3A)
SAM  A 301 (-3.5A)
SAM  A 301 (-3.7A)
SAM  A 301 (-4.8A)
SAM  A 301 (-4.8A)
0.77A 3mteB-3ckkA:
13.6
3mteB-3ckkA:
23.08
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3P2K_A_SAMA6735_0
(16S RRNA METHYLASE)
3ckk TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE

(Homo
sapiens)
5 / 12 GLY A  54
GLY A  56
ALA A 111
LEU A 130
PHE A 131
GOL  A 302 ( 3.3A)
SAM  A 301 (-3.5A)
SAM  A 301 (-3.7A)
SAM  A 301 (-4.8A)
SAM  A 301 (-4.8A)
0.69A 3p2kA-3ckkA:
5.0
3p2kA-3ckkA:
23.08
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3P2K_C_SAMC6735_0
(16S RRNA METHYLASE)
3ckk TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE

(Homo
sapiens)
5 / 12 GLY A  54
GLY A  56
ALA A 111
LEU A 130
PHE A 131
GOL  A 302 ( 3.3A)
SAM  A 301 (-3.5A)
SAM  A 301 (-3.7A)
SAM  A 301 (-4.8A)
SAM  A 301 (-4.8A)
0.72A 3p2kC-3ckkA:
14.1
3p2kC-3ckkA:
23.08
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4KOU_A_C04A207_1
(UNCHARACTERIZED
PROTEIN)
3ckk TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE

(Homo
sapiens)
3 / 3 GLY A  56
GLU A 209
THR A 208
SAM  A 301 (-3.5A)
None
SAM  A 301 (-2.8A)
0.57A 4kouA-3ckkA:
undetectable
4kouA-3ckkA:
19.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4UCI_A_SAMA2409_0
(RNA-DIRECTED RNA
POLYMERASE L)
3ckk TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE

(Homo
sapiens)
5 / 12 THR A 208
GLY A  54
GLY A  56
GLY A  58
ALA A 111
SAM  A 301 (-2.8A)
GOL  A 302 ( 3.3A)
SAM  A 301 (-3.5A)
None
SAM  A 301 (-3.7A)
0.95A 4uciA-3ckkA:
5.4
4uciA-3ckkA:
18.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4UCI_B_SAMB2409_0
(RNA-DIRECTED RNA
POLYMERASE L)
3ckk TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE

(Homo
sapiens)
5 / 12 THR A 208
GLY A  54
GLY A  56
GLY A  58
ALA A 111
SAM  A 301 (-2.8A)
GOL  A 302 ( 3.3A)
SAM  A 301 (-3.5A)
None
SAM  A 301 (-3.7A)
0.94A 4uciB-3ckkA:
5.4
4uciB-3ckkA:
18.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4UCK_A_SAMA2409_0
(RNA-DIRECTED RNA
POLYMERASE L)
3ckk TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE

(Homo
sapiens)
5 / 12 THR A 208
GLY A  54
GLY A  56
GLY A  58
ALA A 111
SAM  A 301 (-2.8A)
GOL  A 302 ( 3.3A)
SAM  A 301 (-3.5A)
None
SAM  A 301 (-3.7A)
0.93A 4uckA-3ckkA:
5.4
4uckA-3ckkA:
18.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5C0O_F_SAMF301_0
(TRNA
(ADENINE(58)-N(1))-M
ETHYLTRANSFERASE
TRMI)
3ckk TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE

(Homo
sapiens)
5 / 12 GLY A  56
GLY A  58
GLY A  59
LEU A  60
GLU A  77
SAM  A 301 (-3.5A)
None
None
None
SAM  A 301 (-2.7A)
0.89A 5c0oF-3ckkA:
11.2
5c0oF-3ckkA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5YBB_A_SAMA601_1
(TYPE I
RESTRICTION-MODIFICA
TION SYSTEM
METHYLTRANSFERASE
SUBUNIT)
3ckk TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE

(Homo
sapiens)
4 / 5 THR A 208
ASP A  52
GLU A  77
ASN A 110
SAM  A 301 (-2.8A)
SAM  A 301 ( 4.9A)
SAM  A 301 (-2.7A)
SAM  A 301 (-3.5A)
1.06A 5ybbA-3ckkA:
4.9
5ybbA-3ckkA:
19.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5YBB_B_SAMB601_1
(TYPE I
RESTRICTION-MODIFICA
TION SYSTEM
METHYLTRANSFERASE
SUBUNIT)
3ckk TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE

(Homo
sapiens)
4 / 7 GLY A  56
GLY A  58
GLU A  77
ASN A 110
SAM  A 301 (-3.5A)
None
SAM  A 301 (-2.7A)
SAM  A 301 (-3.5A)
0.47A 5ybbB-3ckkA:
5.9
5ybbB-3ckkA:
19.34