SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '3ckm'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1T7J_A_478A200_1
(POL POLYPROTEIN)
3ckm YRAM (HI1655)
(Haemophilus
influenzae)
6 / 11 LEU A 261
GLY A 520
ALA A 523
ASP A 522
GLY A 359
VAL A 317
None
1.27A 1t7jA-3ckmA:
undetectable
1t7jA-3ckmA:
14.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2BXE_B_1FLB2001_1
(SERUM ALBUMIN)
3ckm YRAM (HI1655)
(Haemophilus
influenzae)
5 / 12 LEU A 329
ILE A 328
GLY A 318
LEU A 355
SER A 349
None
1.04A 2bxeB-3ckmA:
undetectable
2bxeB-3ckmA:
16.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2NNK_A_ROCA401_1
(PROTEASE)
3ckm YRAM (HI1655)
(Haemophilus
influenzae)
6 / 12 LEU A 261
GLY A 520
ALA A 523
ASP A 522
GLY A 359
VAL A 317
None
1.32A 2nnkA-3ckmA:
undetectable
2nnkA-3ckmA:
15.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3CJT_C_SAMC302_0
(RIBOSOMAL PROTEIN
L11
METHYLTRANSFERASE)
3ckm YRAM (HI1655)
(Haemophilus
influenzae)
6 / 12 LEU A 272
GLY A 273
VAL A 317
LEU A 343
LEU A 516
LEU A 513
None
1.27A 3cjtC-3ckmA:
4.6
3cjtC-3ckmA:
23.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3CJT_O_SAMO302_0
(RIBOSOMAL PROTEIN
L11
METHYLTRANSFERASE)
3ckm YRAM (HI1655)
(Haemophilus
influenzae)
6 / 12 LEU A 272
GLY A 273
VAL A 317
LEU A 343
LEU A 516
LEU A 513
None
1.27A 3cjtO-3ckmA:
3.2
3cjtO-3ckmA:
23.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3LSF_B_PZIB802_0
(GLUTAMATE RECEPTOR 2)
3ckm YRAM (HI1655)
(Haemophilus
influenzae)
3 / 3 SER A 549
ASP A 559
ASN A 371
None
0.98A 3lsfB-3ckmA:
undetectable
3lsfE-3ckmA:
undetectable
3lsfB-3ckmA:
19.94
3lsfE-3ckmA:
19.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3LSF_E_PZIE802_0
(GLUTAMATE RECEPTOR 2)
3ckm YRAM (HI1655)
(Haemophilus
influenzae)
3 / 3 ASP A 559
ASN A 371
SER A 549
None
1.00A 3lsfB-3ckmA:
undetectable
3lsfE-3ckmA:
undetectable
3lsfB-3ckmA:
19.94
3lsfE-3ckmA:
19.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3U7S_A_017A201_1
(POL POLYPROTEIN)
3ckm YRAM (HI1655)
(Haemophilus
influenzae)
6 / 9 LEU A 261
GLY A 520
ALA A 523
ASP A 522
GLY A 359
VAL A 317
None
1.33A 3u7sA-3ckmA:
undetectable
3u7sA-3ckmA:
14.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4B53_B_ACTB1445_0
(IG GAMMA-4 CHAIN C
REGION)
3ckm YRAM (HI1655)
(Haemophilus
influenzae)
3 / 3 GLU A 510
GLY A 508
SER A 469
None
None
SO4  A 582 (-3.1A)
0.70A 4b53B-3ckmA:
undetectable
4b53B-3ckmA:
15.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5E5K_B_017B201_1
(HIV-1 PROTEASE)
3ckm YRAM (HI1655)
(Haemophilus
influenzae)
6 / 12 LEU A 261
GLY A 520
ALA A 523
ASP A 522
VAL A 556
GLY A 359
None
1.20A 5e5kA-3ckmA:
undetectable
5e5kA-3ckmA:
15.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5U4S_B_BEZB301_0
(PUTATIVE SHORT CHAIN
DEHYDROGENASE)
3ckm YRAM (HI1655)
(Haemophilus
influenzae)
4 / 8 ILE A 276
LEU A 320
LEU A 321
MET A 519
None
1.01A 5u4sB-3ckmA:
2.1
5u4sB-3ckmA:
22.16
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5UUN_A_ACTA312_0
(GLUTATHIONE
S-TRANSFERASE-LIKE
PROTEIN)
3ckm YRAM (HI1655)
(Haemophilus
influenzae)
3 / 3 ILE A 412
VAL A 383
PRO A 381
None
0.67A 5uunA-3ckmA:
undetectable
5uunA-3ckmA:
21.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5YW0_A_ACTA410_0
(UNCHARACTERIZED
PROTEIN KDOO)
3ckm YRAM (HI1655)
(Haemophilus
influenzae)
4 / 4 GLY A 391
LEU A 390
VAL A 394
GLU A 363
None
1.32A 5yw0A-3ckmA:
undetectable
5yw0A-3ckmA:
22.22