SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '3d3r'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)

Filter list by:

	DrReposER ID / Desc.	Hit PDBID	Hit Macromolecule	Res. Matches	Interface	HETATM	RMSD	Dali Z-score	Seq. Identity (%)
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	2NNP_A_ROCA401_2 (PROTEASE)	3d3r	HYDROGENASE ASSEMBLY CHAPERONE HYPC/HUPF (Shewanella oneidensis)	5 / 11	ASP A 43 VAL A 21 ILE A 47 VAL A 12 VAL A 9	None	1.00A	2nnpB-3d3rA: undetectable	2nnpB-3d3rA: 22.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	3JAY_A_SAMA1102_1 (STRUCTURAL PROTEIN VP3)	3d3r	HYDROGENASE ASSEMBLY CHAPERONE HYPC/HUPF (Shewanella oneidensis)	3 / 3	ARG A 16 ASP A 29 ASP A 13	None	0.66A	3jayA-3d3rA: undetectable	3jayA-3d3rA: 6.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	3JB2_A_SAMA1102_1 (STRUCTURAL PROTEIN VP3)	3d3r	HYDROGENASE ASSEMBLY CHAPERONE HYPC/HUPF (Shewanella oneidensis)	3 / 3	ARG A 16 ASP A 29 ASP A 13	None	0.66A	3jb2A-3d3rA: undetectable	3jb2A-3d3rA: 6.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	3JB3_A_SAMA1102_1 (STRUCTURAL PROTEIN VP3)	3d3r	HYDROGENASE ASSEMBLY CHAPERONE HYPC/HUPF (Shewanella oneidensis)	3 / 3	ARG A 16 ASP A 29 ASP A 13	None	0.70A	3jb3A-3d3rA: undetectable	3jb3A-3d3rA: 6.52

[["DrReposER ID","Desc.","Hit PDB","Hit molecule","Hit organism","Res. no.","Interface","HETATM","RMSD","Z-score","Seq ID"],["2NNP_A_ROCA401_2","PROTEASE;PROTEASE","3d3r","HYDROGENASE ASSEMBLY CHAPERONE HYPC\/HUPF","Shewanella oneidensis",5,"ASP A  43;VAL A  21;ILE A  47;VAL A  12;VAL A   9","None","1.00A","2nnpB-3d3rA:undetectable","2nnpB-3d3rA:22.94"],["3JAY_A_SAMA1102_1","STRUCTURAL PROTEIN VP3","3d3r","HYDROGENASE ASSEMBLY CHAPERONE HYPC\/HUPF","Shewanella oneidensis",3,"ARG A  16;ASP A  29;ASP A  13","None","0.66A","3jayA-3d3rA:undetectable","3jayA-3d3rA:6.52"],["3JB2_A_SAMA1102_1","STRUCTURAL PROTEIN VP3","3d3r","HYDROGENASE ASSEMBLY CHAPERONE HYPC\/HUPF","Shewanella oneidensis",3,"ARG A  16;ASP A  29;ASP A  13","None","0.66A","3jb2A-3d3rA:undetectable","3jb2A-3d3rA:6.52"],["3JB3_A_SAMA1102_1","STRUCTURAL PROTEIN VP3","3d3r","HYDROGENASE ASSEMBLY CHAPERONE HYPC\/HUPF","Shewanella oneidensis",3,"ARG A  16;ASP A  29;ASP A  13","None","0.70A","3jb3A-3d3rA:undetectable","3jb3A-3d3rA:6.52"]]