SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '3doo'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1FFY_A_MRCA1993_2
(ISOLEUCYL-TRNA
SYNTHETASE)		 3doo SHIKIMATE
DEHYDROGENASE
(Staphylococcus
epidermidis) 		4 / 6 PRO A  62
HIS A  63
GLU A  65
LYS A  52
 None
 1.48A 1ffyA-3dooA:
0.2		 1ffyA-3dooA:
16.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1GTN_L_TRPL81_0
(TRP RNA-BINDING
ATTENUATION PROTEIN)		 3doo SHIKIMATE
DEHYDROGENASE
(Staphylococcus
epidermidis) 		5 / 9 VAL A 146
GLY A 124
ALA A 133
THR A 182
ILE A 122
 None
 1.26A 1gtnL-3dooA:
undetectable
1gtnM-3dooA:
undetectable		 1gtnL-3dooA:
13.83
1gtnM-3dooA:
13.83
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2NNH_A_9CRA501_1
(CYTOCHROME P450 2C8)		 3doo SHIKIMATE
DEHYDROGENASE
(Staphylococcus
epidermidis) 		5 / 11 GLY A  92
ILE A  54
ALA A   4
VAL A  87
ILE A  67
 None
 1.13A 2nnhA-3dooA:
undetectable		 2nnhA-3dooA:
21.83
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4A97_A_ZPCA1318_2
(CYS-LOOP
LIGAND-GATED ION
CHANNEL)		 3doo SHIKIMATE
DEHYDROGENASE
(Staphylococcus
epidermidis) 		4 / 7 TYR A  97
VAL A  84
ILE A  67
GLU A  76
 None
 1.04A 4a97E-3dooA:
undetectable		 4a97E-3dooA:
23.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4A97_D_ZPCD1318_1
(CYS-LOOP
LIGAND-GATED ION
CHANNEL)		 3doo SHIKIMATE
DEHYDROGENASE
(Staphylococcus
epidermidis) 		4 / 8 TYR A  97
VAL A  84
ILE A  67
GLU A  76
 None
 0.93A 4a97C-3dooA:
undetectable		 4a97C-3dooA:
23.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4A97_H_ZPCH1318_1
(CYS-LOOP
LIGAND-GATED ION
CHANNEL)		 3doo SHIKIMATE
DEHYDROGENASE
(Staphylococcus
epidermidis) 		4 / 8 TYR A  97
VAL A  84
ILE A  67
GLU A  76
 None
 1.00A 4a97G-3dooA:
undetectable		 4a97G-3dooA:
23.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4E7C_D_ACTD504_0
(UDP-N-ACETYLGLUCOSAM
INE
1-CARBOXYVINYLTRANSF
ERASE)		 3doo SHIKIMATE
DEHYDROGENASE
(Staphylococcus
epidermidis) 		3 / 3 GLY A 240
SER A 243
TRP A 247
 None
 0.76A 4e7cD-3dooA:
undetectable		 4e7cD-3dooA:
23.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4OBW_B_SAMB601_0
(2-METHOXY-6-POLYPREN
YL-1,4-BENZOQUINOL
METHYLASE,
MITOCHONDRIAL)		 3doo SHIKIMATE
DEHYDROGENASE
(Staphylococcus
epidermidis) 		5 / 12 ALA A 128
GLY A 127
GLY A 126
ILE A 132
GLY A 101
 None
 0.89A 4obwB-3dooA:
undetectable		 4obwB-3dooA:
21.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4W5Q_A_IPHA905_0
(PROTEIN ARGONAUTE-2)		 3doo SHIKIMATE
DEHYDROGENASE
(Staphylococcus
epidermidis) 		4 / 6 ASP A 100
ALA A  78
THR A  99
THR A  86
 SKM  A 300 (-2.9A)
None
None
None
 1.46A 4w5qA-3dooA:
undetectable		 4w5qA-3dooA:
15.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4W5R_A_IPHA905_0
(PROTEIN ARGONAUTE-2)		 3doo SHIKIMATE
DEHYDROGENASE
(Staphylococcus
epidermidis) 		4 / 6 ASP A 100
ALA A  78
THR A  99
THR A  86
 SKM  A 300 (-2.9A)
None
None
None
 1.49A 4w5rA-3dooA:
undetectable		 4w5rA-3dooA:
15.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4W5T_A_IPHA905_0
(PROTEIN ARGONAUTE-2)		 3doo SHIKIMATE
DEHYDROGENASE
(Staphylococcus
epidermidis) 		4 / 6 ASP A 100
ALA A  78
THR A  99
THR A  86
 SKM  A 300 (-2.9A)
None
None
None
 1.45A 4w5tA-3dooA:
undetectable		 4w5tA-3dooA:
15.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4X1F_A_3WFA501_1
(NUCLEAR RECEPTOR
SUBFAMILY 1 GROUP I
MEMBER 2)		 3doo SHIKIMATE
DEHYDROGENASE
(Staphylococcus
epidermidis) 		5 / 12 LEU A 173
PHE A 154
HIS A 168
LEU A 166
ILE A 195
 None
 1.06A 4x1fA-3dooA:
undetectable		 4x1fA-3dooA:
21.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4X1G_A_3WFA501_1
(NUCLEAR RECEPTOR
SUBFAMILY 1 GROUP I
MEMBER 2)		 3doo SHIKIMATE
DEHYDROGENASE
(Staphylococcus
epidermidis) 		5 / 12 LEU A 173
PHE A 154
HIS A 168
LEU A 166
ILE A 195
 None
 1.04A 4x1gA-3dooA:
undetectable		 4x1gA-3dooA:
21.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4Z4C_A_IPHA906_0
(PROTEIN ARGONAUTE-2)		 3doo SHIKIMATE
DEHYDROGENASE
(Staphylococcus
epidermidis) 		4 / 6 ASP A 100
ALA A  78
THR A  99
THR A  86
 SKM  A 300 (-2.9A)
None
None
None
 1.44A 4z4cA-3dooA:
undetectable		 4z4cA-3dooA:
15.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4Z4F_A_IPHA904_0
(PROTEIN ARGONAUTE-2)		 3doo SHIKIMATE
DEHYDROGENASE
(Staphylococcus
epidermidis) 		4 / 6 ASP A 100
ALA A  78
THR A  99
THR A  86
 SKM  A 300 (-2.9A)
None
None
None
 1.47A 4z4fA-3dooA:
undetectable		 4z4fA-3dooA:
15.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4Z4G_A_IPHA905_0
(PROTEIN ARGONAUTE-2)		 3doo SHIKIMATE
DEHYDROGENASE
(Staphylococcus
epidermidis) 		4 / 5 ASP A 100
ALA A  78
THR A  99
THR A  86
 SKM  A 300 (-2.9A)
None
None
None
 1.46A 4z4gA-3dooA:
undetectable		 4z4gA-3dooA:
15.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5DZK_W_BEZW801_0
(ATP-DEPENDENT CLP
PROTEASE PROTEOLYTIC
SUBUNIT 1
ATP-DEPENDENT CLP
PROTEASE PROTEOLYTIC
SUBUNIT 2
BEZ-LEU-LEU)		 3doo SHIKIMATE
DEHYDROGENASE
(Staphylococcus
epidermidis) 		4 / 5 ILE A 180
GLY A 124
ILE A 132
LEU A 123
 None
 0.86A 5dzkB-3dooA:
2.6
5dzkI-3dooA:
undetectable
5dzkW-3dooA:
undetectable		 5dzkB-3dooA:
22.34
5dzkI-3dooA:
22.26
5dzkW-3dooA:
0.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5DZK_X_BEZX801_0
(ATP-DEPENDENT CLP
PROTEASE PROTEOLYTIC
SUBUNIT 1
BEZ-LEU-LEU)		 3doo SHIKIMATE
DEHYDROGENASE
(Staphylococcus
epidermidis) 		4 / 5 ILE A 180
GLY A 124
ILE A 132
LEU A 123
 None
 0.83A 5dzki-3dooA:
undetectable
5dzkj-3dooA:
undetectable
5dzkx-3dooA:
undetectable		 5dzki-3dooA:
22.26
5dzkj-3dooA:
22.26
5dzkx-3dooA:
0.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5DZK_Z_BEZZ801_0
(ATP-DEPENDENT CLP
PROTEASE PROTEOLYTIC
SUBUNIT 1
BEZ-LEU-LEU)		 3doo SHIKIMATE
DEHYDROGENASE
(Staphylococcus
epidermidis) 		4 / 4 ILE A 180
GLY A 124
ILE A 132
LEU A 123
 None
 0.90A 5dzkl-3dooA:
undetectable
5dzkz-3dooA:
undetectable		 5dzkl-3dooA:
22.26
5dzkz-3dooA:
0.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6DWN_A_AQ4A602_1
(CYTOCHROME P450 1A1)		 3doo SHIKIMATE
DEHYDROGENASE
(Staphylococcus
epidermidis) 		4 / 5 ILE A 180
SER A 207
ALA A 118
LEU A 144
 None
 1.04A 6dwnA-3dooA:
undetectable		 6dwnA-3dooA:
15.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6ESM_A_PZEA307_1
(MATRIX
METALLOPROTEINASE-9,
MATRIX
METALLOPROTEINASE-9)		 3doo SHIKIMATE
DEHYDROGENASE
(Staphylococcus
epidermidis) 		3 / 3 TYR A  32
HIS A  20
PHE A  23
 None
 0.99A 6esmA-3dooA:
undetectable		 6esmA-3dooA:
17.10