SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '3gcd'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1BX4_A_ADNA350_2
(PROTEIN (ADENOSINE
KINASE))		 3gcd RTX TOXIN RTXA
(Vibrio
cholerae) 		3 / 3 LEU A  64
SER A  66
ASN A  10
 None
 0.77A 1bx4A-3gcdA:
undetectable		 1bx4A-3gcdA:
20.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1D4Y_A_TPVA501_1
(PROTEIN (HIV-1
PROTEASE))		 3gcd RTX TOXIN RTXA
(Vibrio
cholerae) 		5 / 10 LEU A  64
ASP A  41
GLY A 139
ILE A 137
VAL A  36
 None
None
AZ0  A 213 ( 3.8A)
None
None
 1.08A 1d4yA-3gcdA:
undetectable		 1d4yA-3gcdA:
19.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1XOS_A_VIAA1_1
(CAMP-SPECIFIC
3',5'-CYCLIC
PHOSPHODIESTERASE 4B)		 3gcd RTX TOXIN RTXA
(Vibrio
cholerae) 		5 / 12 TYR A 106
MET A 159
LEU A 115
PHE A 151
ILE A 135
 None
 1.47A 1xosA-3gcdA:
undetectable		 1xosA-3gcdA:
20.91
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2IZQ_A_DVAA8_0
(GRAMICIDIN D)		 3gcd RTX TOXIN RTXA
(Vibrio
cholerae) 		3 / 3 VAL A  60
TRP A  86
VAL A  36
 None
 0.94A 2izqA-3gcdA:
undetectable
2izqB-3gcdA:
undetectable		 2izqA-3gcdA:
7.93
2izqB-3gcdA:
7.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2PNJ_B_CHDB501_0
(FERROCHELATASE,
MITOCHONDRIAL)		 3gcd RTX TOXIN RTXA
(Vibrio
cholerae) 		5 / 12 MET A  38
LEU A 111
LEU A 115
PRO A 132
VAL A 168
 None
 1.38A 2pnjB-3gcdA:
2.6		 2pnjB-3gcdA:
19.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2R2V_D_ACTD37_0
(GCN4 LEUCINE ZIPPER)		 3gcd RTX TOXIN RTXA
(Vibrio
cholerae) 		3 / 3 LYS A 131
ARG A 165
VAL A 166
 None
 0.79A 2r2vC-3gcdA:
undetectable
2r2vD-3gcdA:
undetectable		 2r2vC-3gcdA:
11.17
2r2vD-3gcdA:
11.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ZW9_B_SAMB801_1
(LEUCINE CARBOXYL
METHYLTRANSFERASE 2)		 3gcd RTX TOXIN RTXA
(Vibrio
cholerae) 		4 / 8 ILE A 156
LYS A  83
ARG A  29
SER A 204
 None
None
IHP  A 214 (-4.0A)
None
 0.99A 2zw9B-3gcdA:
undetectable		 2zw9B-3gcdA:
13.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3A2Q_A_ACAA602_1
(6-AMINOHEXANOATE-CYC
LIC-DIMER HYDROLASE)		 3gcd RTX TOXIN RTXA
(Vibrio
cholerae) 		4 / 7 ALA A  49
ALA A  48
ALA A  52
GLN A  63
 None
 0.67A 3a2qA-3gcdA:
undetectable		 3a2qA-3gcdA:
18.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3GAL_B_1GNB999_1
(GALECTIN-7)		 3gcd RTX TOXIN RTXA
(Vibrio
cholerae) 		4 / 6 HIS A   7
ASN A  40
ASN A   8
GLU A  39
 None
 1.41A 3galB-3gcdA:
undetectable		 3galB-3gcdA:
21.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3IA4_A_MTXA164_1
(DIHYDROFOLATE
REDUCTASE)		 3gcd RTX TOXIN RTXA
(Vibrio
cholerae) 		5 / 12 ALA A  47
LEU A 175
SER A 136
ILE A 137
LEU A 142
 AZ0  A 213 (-3.8A)
AZ0  A 213 (-3.4A)
IHP  A 214 (-2.9A)
None
None
 1.18A 3ia4A-3gcdA:
undetectable		 3ia4A-3gcdA:
17.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3IA4_B_MTXB164_1
(DIHYDROFOLATE
REDUCTASE)		 3gcd RTX TOXIN RTXA
(Vibrio
cholerae) 		5 / 12 ALA A  47
LEU A 175
SER A 136
ILE A 137
LEU A 142
 AZ0  A 213 (-3.8A)
AZ0  A 213 (-3.4A)
IHP  A 214 (-2.9A)
None
None
 1.18A 3ia4B-3gcdA:
undetectable		 3ia4B-3gcdA:
17.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3IA4_C_MTXC164_1
(DIHYDROFOLATE
REDUCTASE)		 3gcd RTX TOXIN RTXA
(Vibrio
cholerae) 		5 / 12 ALA A  47
LEU A 175
SER A 136
ILE A 137
LEU A 142
 AZ0  A 213 (-3.8A)
AZ0  A 213 (-3.4A)
IHP  A 214 (-2.9A)
None
None
 1.19A 3ia4C-3gcdA:
undetectable		 3ia4C-3gcdA:
17.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3IA4_D_MTXD164_1
(DIHYDROFOLATE
REDUCTASE)		 3gcd RTX TOXIN RTXA
(Vibrio
cholerae) 		5 / 12 ALA A  47
LEU A 175
SER A 136
ILE A 137
LEU A 142
 AZ0  A 213 (-3.8A)
AZ0  A 213 (-3.4A)
IHP  A 214 (-2.9A)
None
None
 1.19A 3ia4D-3gcdA:
undetectable		 3ia4D-3gcdA:
17.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3L8L_B_DVAB8_0
(GRAMICIDIN D)		 3gcd RTX TOXIN RTXA
(Vibrio
cholerae) 		3 / 3 VAL A  36
VAL A  60
TRP A  86
 None
 0.82A 3l8lA-3gcdA:
undetectable
3l8lB-3gcdA:
undetectable		 3l8lA-3gcdA:
7.93
3l8lB-3gcdA:
7.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4LG1_C_SAMC301_0
(PROTEIN-LYSINE
METHYLTRANSFERASE
METTL21D)		 3gcd RTX TOXIN RTXA
(Vibrio
cholerae) 		5 / 12 ALA A  47
GLY A  90
LEU A 111
LEU A 103
ALA A  48
 AZ0  A 213 (-3.8A)
None
None
None
None
 1.16A 4lg1C-3gcdA:
undetectable		 4lg1C-3gcdA:
21.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5HI6_B_MTXB201_1
(DIHYDROFOLATE
REDUCTASE)		 3gcd RTX TOXIN RTXA
(Vibrio
cholerae) 		5 / 12 ALA A  47
LEU A 175
SER A 136
ILE A 137
LEU A 142
 AZ0  A 213 (-3.8A)
AZ0  A 213 (-3.4A)
IHP  A 214 (-2.9A)
None
None
 1.14A 5hi6B-3gcdA:
undetectable		 5hi6B-3gcdA:
21.50
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5I1P_G_DVAG9_0
(D-VILLIN HEADPIECE
SUBDOMAIN
VILLIN-1)		 3gcd RTX TOXIN RTXA
(Vibrio
cholerae) 		3 / 3 ALA A  47
ASN A  50
LEU A  51
 AZ0  A 213 (-3.8A)
AZ0  A 213 (-3.8A)
None
 0.48A 5i1pD-3gcdA:
undetectable		 5i1pD-3gcdA:
10.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5OG9_B_TESB502_1
(-)		 3gcd RTX TOXIN RTXA
(Vibrio
cholerae) 		5 / 12 LEU A  64
TRP A  86
ILE A 135
MET A 159
LEU A 103
 None
 1.09A 5og9B-3gcdA:
undetectable		 5og9B-3gcdA:
18.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5UUN_A_ACTA309_0
(GLUTATHIONE
S-TRANSFERASE-LIKE
PROTEIN)		 3gcd RTX TOXIN RTXA
(Vibrio
cholerae) 		4 / 4 LEU A  80
GLY A  32
SER A  58
SER A  59
 None
 1.17A 5uunA-3gcdA:
undetectable		 5uunA-3gcdA:
22.41