SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '3gdo'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1GTN_H_TRPH81_0
(TRP RNA-BINDING
ATTENUATION PROTEIN)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		5 / 9 THR A  90
GLY A 113
ALA A 331
THR A 107
ILE A 335
 None
 1.34A 1gtnG-3gdoA:
undetectable
1gtnH-3gdoA:
undetectable		 1gtnG-3gdoA:
12.11
1gtnH-3gdoA:
12.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1KB9_A_PCFA514_0
(CYTOCHROME B
CYTOCHROME C1, HEME
PROTEIN
UBIQUINOL-CYTOCHROME
C REDUCTASE COMPLEX
CORE PROTEIN I
UBIQUINOL-CYTOCHROME
C REDUCTASE
IRON-SULFUR SUBUNIT)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		4 / 8 HIS A  29
ILE A  78
VAL A 329
SER A 320
 None
 0.98A 1kb9A-3gdoA:
undetectable
1kb9C-3gdoA:
undetectable
1kb9D-3gdoA:
undetectable
1kb9E-3gdoA:
undetectable		 1kb9A-3gdoA:
20.39
1kb9C-3gdoA:
21.29
1kb9D-3gdoA:
20.81
1kb9E-3gdoA:
19.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1NV8_A_SAMA300_0
(HEMK PROTEIN)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		5 / 12 ILE A  74
GLY A  97
VAL A 100
ASN A  70
ALA A  92
 None
 1.09A 1nv8A-3gdoA:
4.2		 1nv8A-3gdoA:
25.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1RXC_B_URFB2011_1
(URIDINE
PHOSPHORYLASE)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		4 / 8 GLY A 237
MET A 209
ILE A 239
VAL A 240
 None
 0.93A 1rxcB-3gdoA:
undetectable		 1rxcB-3gdoA:
22.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1RXC_C_URFC2081_1
(URIDINE
PHOSPHORYLASE)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		4 / 7 GLY A 237
MET A 209
ILE A 239
VAL A 240
 None
 0.97A 1rxcC-3gdoA:
undetectable		 1rxcC-3gdoA:
22.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1RXC_D_URFD2021_1
(URIDINE
PHOSPHORYLASE)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		4 / 7 GLY A 237
MET A 209
ILE A 239
VAL A 240
 None
 0.94A 1rxcD-3gdoA:
undetectable		 1rxcD-3gdoA:
22.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1RXC_E_URFE2031_1
(URIDINE
PHOSPHORYLASE)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		4 / 8 GLY A 237
MET A 209
ILE A 239
VAL A 240
 None
 0.91A 1rxcE-3gdoA:
undetectable		 1rxcE-3gdoA:
22.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1RXC_F_URFF2001_1
(URIDINE
PHOSPHORYLASE)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		4 / 7 GLY A 237
MET A 209
ILE A 239
VAL A 240
 None
 0.90A 1rxcF-3gdoA:
undetectable		 1rxcF-3gdoA:
22.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1RXC_I_URFI2041_1
(URIDINE
PHOSPHORYLASE)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		4 / 8 GLY A 237
MET A 209
ILE A 239
VAL A 240
 None
 0.97A 1rxcI-3gdoA:
undetectable		 1rxcI-3gdoA:
22.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1RXC_K_URFK2061_1
(URIDINE
PHOSPHORYLASE)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		4 / 8 GLY A 237
MET A 209
ILE A 239
VAL A 240
 None
 0.93A 1rxcK-3gdoA:
undetectable		 1rxcK-3gdoA:
22.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1RXC_L_URFL2071_1
(URIDINE
PHOSPHORYLASE)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		4 / 7 GLY A 237
MET A 209
ILE A 239
VAL A 240
 None
 0.92A 1rxcL-3gdoA:
undetectable		 1rxcL-3gdoA:
22.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1SG9_C_SAMC303_0
(HEMK PROTEIN)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		5 / 12 ILE A  74
GLY A  97
VAL A 100
ASN A  70
ALA A  92
 None
 1.12A 1sg9C-3gdoA:
4.0		 1sg9C-3gdoA:
25.07
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2L8M_A_CAMA415_0
(CAMPHOR
5-MONOOXYGENASE)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		5 / 9 TYR A 313
THR A  90
VAL A  77
ILE A  78
VAL A  79
 None
 1.34A 2l8mA-3gdoA:
undetectable		 2l8mA-3gdoA:
21.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3BA0_A_HAEA477_1
(MACROPHAGE
METALLOELASTASE)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		3 / 3 HIS A 131
GLU A 333
HIS A 196
 None
 0.77A 3ba0A-3gdoA:
undetectable		 3ba0A-3gdoA:
20.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3KVV_A_URFA254_1
(URIDINE
PHOSPHORYLASE)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		4 / 6 GLY A 237
MET A 209
ILE A 239
VAL A 240
 None
 0.93A 3kvvA-3gdoA:
undetectable		 3kvvA-3gdoA:
22.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3KVV_B_URFB254_1
(URIDINE
PHOSPHORYLASE)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		4 / 6 GLY A 237
MET A 209
ILE A 239
VAL A 240
 None
 0.94A 3kvvB-3gdoA:
undetectable		 3kvvB-3gdoA:
22.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3KVV_C_URFC254_1
(URIDINE
PHOSPHORYLASE)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		4 / 6 GLY A 237
MET A 209
ILE A 239
VAL A 240
 None
 0.96A 3kvvC-3gdoA:
undetectable		 3kvvC-3gdoA:
22.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3KVV_D_URFD254_1
(URIDINE
PHOSPHORYLASE)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		4 / 6 GLY A 237
MET A 209
ILE A 239
VAL A 240
 None
 0.92A 3kvvD-3gdoA:
undetectable		 3kvvD-3gdoA:
22.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3KVV_E_URFE254_1
(URIDINE
PHOSPHORYLASE)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		4 / 6 GLY A 237
MET A 209
ILE A 239
VAL A 240
 None
 0.90A 3kvvE-3gdoA:
undetectable		 3kvvE-3gdoA:
22.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3KVV_F_URFF254_1
(URIDINE
PHOSPHORYLASE)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		4 / 6 GLY A 237
MET A 209
ILE A 239
VAL A 240
 None
 0.93A 3kvvF-3gdoA:
undetectable		 3kvvF-3gdoA:
22.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ZOS_A_0LIA1004_1
(EPITHELIAL DISCOIDIN
DOMAIN-CONTAINING
RECEPTOR 1)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		5 / 11 VAL A  52
ALA A  59
GLY A  25
VAL A  16
GLY A  30
 None
 1.17A 3zosA-3gdoA:
undetectable
3zosB-3gdoA:
undetectable		 3zosA-3gdoA:
22.80
3zosB-3gdoA:
22.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4DTA_A_ADNA401_1
(APH(2'')-ID)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		5 / 10 ALA A 110
ILE A 338
ILE A 191
LEU A 195
ILE A 340
 None
 1.19A 4dtaA-3gdoA:
undetectable		 4dtaA-3gdoA:
25.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4E1V_A_URFA1301_1
(URIDINE
PHOSPHORYLASE)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		4 / 8 GLY A 237
MET A 209
ILE A 239
VAL A 240
 None
 0.90A 4e1vA-3gdoA:
undetectable		 4e1vA-3gdoA:
23.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4E1V_B_URFB1301_1
(URIDINE
PHOSPHORYLASE)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		4 / 7 GLY A 237
MET A 209
ILE A 239
VAL A 240
 None
 0.92A 4e1vB-3gdoA:
undetectable		 4e1vB-3gdoA:
23.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4E1V_C_URFC1301_1
(URIDINE
PHOSPHORYLASE)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		4 / 8 GLY A 237
MET A 209
ILE A 239
VAL A 240
 None
 0.92A 4e1vC-3gdoA:
undetectable		 4e1vC-3gdoA:
23.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4E1V_D_URFD1301_1
(URIDINE
PHOSPHORYLASE)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		4 / 8 GLY A 237
MET A 209
ILE A 239
VAL A 240
 None
 0.90A 4e1vD-3gdoA:
undetectable		 4e1vD-3gdoA:
23.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4E1V_E_URFE1301_1
(URIDINE
PHOSPHORYLASE)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		4 / 8 GLY A 237
MET A 209
ILE A 239
VAL A 240
 None
 0.94A 4e1vE-3gdoA:
undetectable		 4e1vE-3gdoA:
23.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4E1V_F_URFF1301_1
(URIDINE
PHOSPHORYLASE)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		4 / 6 GLY A 237
MET A 209
ILE A 239
VAL A 240
 None
 0.90A 4e1vF-3gdoA:
undetectable		 4e1vF-3gdoA:
23.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4E1V_G_URFG1301_1
(URIDINE
PHOSPHORYLASE)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		4 / 8 GLY A 237
MET A 209
ILE A 239
VAL A 240
 None
 0.90A 4e1vG-3gdoA:
undetectable		 4e1vG-3gdoA:
23.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4E1V_H_URFH1301_1
(URIDINE
PHOSPHORYLASE)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		4 / 8 GLY A 237
MET A 209
ILE A 239
VAL A 240
 None
 0.92A 4e1vH-3gdoA:
undetectable		 4e1vH-3gdoA:
23.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4FOR_A_FLPA711_1
(LACTOTRANSFERRIN)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		4 / 7 THR A 330
GLY A 334
VAL A 337
GLY A 199
 None
 0.73A 4forA-3gdoA:
undetectable		 4forA-3gdoA:
19.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4N49_A_SAMA601_1
(CAP-SPECIFIC MRNA
(NUCLEOSIDE-2'-O-)-M
ETHYLTRANSFERASE 1)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		4 / 4 ASN A 307
GLY A 280
ASP A  37
ASP A 276
 None
 1.39A 4n49A-3gdoA:
3.1		 4n49A-3gdoA:
22.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4PEV_A_ADNA501_1
(MEMBRANE LIPOPROTEIN
FAMILY PROTEIN)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		5 / 12 VAL A 208
SER A 238
ASP A 185
PHE A 221
GLY A 237
 None
 1.42A 4pevA-3gdoA:
6.0		 4pevA-3gdoA:
22.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4PEV_B_ADNB501_1
(MEMBRANE LIPOPROTEIN
FAMILY PROTEIN)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		5 / 12 VAL A 208
GLY A 181
ASP A 185
PHE A 221
GLY A 237
 None
 1.34A 4pevB-3gdoA:
3.0		 4pevB-3gdoA:
22.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4PEV_B_ADNB501_1
(MEMBRANE LIPOPROTEIN
FAMILY PROTEIN)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		5 / 12 VAL A 208
SER A 238
ASP A 185
PHE A 221
GLY A 237
 None
 1.41A 4pevB-3gdoA:
3.0		 4pevB-3gdoA:
22.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4UCK_A_SAMA2409_1
(RNA-DIRECTED RNA
POLYMERASE L)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		3 / 3 SER A 305
ASP A 192
ASP A 262
 None
 0.77A 4uckA-3gdoA:
2.5		 4uckA-3gdoA:
21.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ND7_B_TA1B601_2
(TUBULIN BETA-2B
CHAIN)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		3 / 3 THR A 156
PRO A 245
ARG A 246
 None
 0.86A 5nd7B-3gdoA:
undetectable		 5nd7B-3gdoA:
22.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5NNA_D_BZMD301_0
(ISATIN HYDROLASE A)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		5 / 12 ILE A 341
HIS A 131
GLY A 187
ASP A 185
GLY A 181
 None
 1.08A 5nnaD-3gdoA:
undetectable		 5nnaD-3gdoA:
20.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5VKQ_B_PCFB1808_0
(NO MECHANORECEPTOR
POTENTIAL C ISOFORM
L)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		5 / 10 HIS A 250
TYR A 259
ILE A 190
ILE A 191
LEU A 195
 None
 1.44A 5vkqA-3gdoA:
undetectable
5vkqB-3gdoA:
undetectable		 5vkqA-3gdoA:
11.84
5vkqB-3gdoA:
11.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5W7P_A_SAMA501_1
(OXAC)		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		4 / 5 TYR A 247
HIS A 189
ASP A 136
ASP A 282
 None
 1.20A 5w7pA-3gdoA:
3.2		 5w7pA-3gdoA:
21.44
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6BER_A_DVAA2_0
(E(DVA)DP(DGL)(DHI)(D
PR)N(DAL)(DPR))		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		3 / 3 GLU A 275
ASP A  34
PRO A  31
 None
 0.53A 6berA-3gdoA:
undetectable		 6berA-3gdoA:
5.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6N7F_A_RBFA502_0
(PUTATIVE GLUTATHIONE
REDUCTASE (GR))		 3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA
(Bacillus
subtilis) 		4 / 7 GLY A 288
LYS A 258
TYR A 287
ASN A 137
 None
 0.94A 6n7fA-3gdoA:
undetectable		 6n7fA-3gdoA:
13.16