SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '3gyq'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1FM6_X_BRLX504_1
(PEROXISOME
PROLIFERATOR
ACTIVATED RECEPTOR
GAMMA)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
5 / 12 ILE A 146
GLY A 144
SER A 137
LEU A 195
LEU A 257
None
None
None
SAM  A 270 (-4.1A)
None
1.35A 1fm6X-3gyqA:
undetectable
1fm6X-3gyqA:
21.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1SA1_B_PODB700_1
(TUBULIN ALPHA CHAIN
TUBULIN BETA CHAIN)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
5 / 12 VAL A 203
LEU A 121
LEU A 253
VAL A 118
ALA A 214
None
1.17A 1sa1A-3gyqA:
undetectable
1sa1B-3gyqA:
undetectable
1sa1A-3gyqA:
20.68
1sa1B-3gyqA:
21.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1V2X_A_SAMA400_0
(TRNA (GM18)
METHYLTRANSFERASE)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
6 / 12 GLY A 223
GLY A 222
ILE A 238
MET A 240
SER A 246
LEU A 247
None
None
SAM  A 270 (-3.5A)
SAM  A 270 (-3.5A)
SAM  A 270 (-2.8A)
SAM  A 270 (-4.4A)
1.26A 1v2xA-3gyqA:
17.5
1v2xA-3gyqA:
23.83
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1V2X_A_SAMA400_0
(TRNA (GM18)
METHYLTRANSFERASE)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
5 / 12 PHE A 217
GLY A 218
GLY A 223
ILE A 238
LEU A 247
None
SAM  A 270 (-2.9A)
None
SAM  A 270 (-3.5A)
SAM  A 270 (-4.4A)
0.67A 1v2xA-3gyqA:
17.5
1v2xA-3gyqA:
23.83
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1V2X_A_SAMA400_0
(TRNA (GM18)
METHYLTRANSFERASE)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
7 / 12 PHE A 217
GLY A 218
ILE A 238
MET A 240
SER A 246
LEU A 247
VAL A 249
None
SAM  A 270 (-2.9A)
SAM  A 270 (-3.5A)
SAM  A 270 (-3.5A)
SAM  A 270 (-2.8A)
SAM  A 270 (-4.4A)
SAM  A 270 ( 4.2A)
0.77A 1v2xA-3gyqA:
17.5
1v2xA-3gyqA:
23.83
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1X7P_A_SAMA301_0
(RRNA
METHYLTRANSFERASE)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
6 / 11 GLY A 218
GLY A 223
ILE A 238
MET A 240
SER A 246
LEU A 247
SAM  A 270 (-2.9A)
None
SAM  A 270 (-3.5A)
SAM  A 270 (-3.5A)
SAM  A 270 (-2.8A)
SAM  A 270 (-4.4A)
0.91A 1x7pA-3gyqA:
20.9
1x7pB-3gyqA:
22.8
1x7pA-3gyqA:
27.99
1x7pB-3gyqA:
27.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1X7P_B_SAMB302_0
(RRNA
METHYLTRANSFERASE)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
5 / 10 GLY A 218
GLY A 223
ILE A 238
MET A 240
LEU A 247
SAM  A 270 (-2.9A)
None
SAM  A 270 (-3.5A)
SAM  A 270 (-3.5A)
SAM  A 270 (-4.4A)
0.78A 1x7pA-3gyqA:
20.9
1x7pB-3gyqA:
22.8
1x7pA-3gyqA:
27.99
1x7pB-3gyqA:
27.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2V95_A_HCYA1375_1
(CORTICOSTEROID-BINDI
NG GLOBULIN)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
5 / 12 ALA A  14
PRO A  13
PHE A  97
ILE A  19
ASP A  20
None
1.29A 2v95A-3gyqA:
undetectable
2v95A-3gyqA:
23.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3AXZ_A_ADNA401_1
(TRNA
(GUANINE-N(1)-)-METH
YLTRANSFERASE)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
5 / 12 LEU A 195
GLY A 218
GLY A 223
SER A 237
ILE A 238
SAM  A 270 (-4.1A)
SAM  A 270 (-2.9A)
None
SAM  A 270 (-4.3A)
SAM  A 270 (-3.5A)
0.69A 3axzA-3gyqA:
7.7
3axzA-3gyqA:
21.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3DCM_X_SAMX5452_0
(UNCHARACTERIZED
PROTEIN TM_1570)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
6 / 11 ALA A 197
GLY A 218
GLY A 223
ILE A 238
LEU A 247
VAL A 249
SAM  A 270 (-3.8A)
SAM  A 270 (-2.9A)
None
SAM  A 270 (-3.5A)
SAM  A 270 (-4.4A)
SAM  A 270 ( 4.2A)
0.69A 3dcmX-3gyqA:
14.5
3dcmX-3gyqA:
23.27
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3EM0_B_CHDB151_0
(ILEAL BILE
ACID-BINDING PROTEIN)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
5 / 12 ILE A 111
ILE A 146
VAL A 148
LEU A 253
LEU A 171
None
1.05A 3em0B-3gyqA:
undetectable
3em0B-3gyqA:
19.33
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3GYQ_A_SAMA270_0
(RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
10 / 12 LEU A 195
LYS A 196
ALA A 197
GLY A 218
LYS A 221
ILE A 238
MET A 240
SER A 246
LEU A 247
SER A 252
SAM  A 270 (-4.1A)
SAM  A 270 (-3.3A)
SAM  A 270 (-3.8A)
SAM  A 270 (-2.9A)
None
SAM  A 270 (-3.5A)
SAM  A 270 (-3.5A)
SAM  A 270 (-2.8A)
SAM  A 270 (-4.4A)
SAM  A 270 (-3.1A)
0.03A 3gyqA-3gyqA:
44.5
3gyqB-3gyqA:
39.3
3gyqA-3gyqA:
100.00
3gyqB-3gyqA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3GYQ_A_SAMA270_0
(RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
7 / 12 LYS A 196
ALA A 197
GLY A 223
ILE A 238
MET A 240
SER A 246
LEU A 247
SAM  A 270 (-3.3A)
SAM  A 270 (-3.8A)
None
SAM  A 270 (-3.5A)
SAM  A 270 (-3.5A)
SAM  A 270 (-2.8A)
SAM  A 270 (-4.4A)
1.22A 3gyqA-3gyqA:
44.5
3gyqB-3gyqA:
39.3
3gyqA-3gyqA:
100.00
3gyqB-3gyqA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3GYQ_B_SAMB270_0
(RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
8 / 11 GLY A 218
LYS A 221
ILE A 238
MET A 240
SER A 246
LEU A 247
VAL A 249
SER A 252
SAM  A 270 (-2.9A)
None
SAM  A 270 (-3.5A)
SAM  A 270 (-3.5A)
SAM  A 270 (-2.8A)
SAM  A 270 (-4.4A)
SAM  A 270 ( 4.2A)
SAM  A 270 (-3.1A)
0.86A 3gyqB-3gyqA:
39.3
3gyqB-3gyqA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3GYQ_B_SAMB270_0
(RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
10 / 11 LEU A 195
LYS A 196
ALA A 197
GLY A 218
LYS A 221
ILE A 238
MET A 240
LEU A 247
VAL A 249
SER A 252
SAM  A 270 (-4.1A)
SAM  A 270 (-3.3A)
SAM  A 270 (-3.8A)
SAM  A 270 (-2.9A)
None
SAM  A 270 (-3.5A)
SAM  A 270 (-3.5A)
SAM  A 270 (-4.4A)
SAM  A 270 ( 4.2A)
SAM  A 270 (-3.1A)
0.43A 3gyqB-3gyqA:
39.3
3gyqB-3gyqA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3GYQ_B_SAMB270_0
(RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
6 / 11 LYS A 196
ALA A 197
GLY A 223
ILE A 238
MET A 240
LEU A 247
SAM  A 270 (-3.3A)
SAM  A 270 (-3.8A)
None
SAM  A 270 (-3.5A)
SAM  A 270 (-3.5A)
SAM  A 270 (-4.4A)
1.38A 3gyqB-3gyqA:
39.3
3gyqB-3gyqA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3NK7_A_SAMA770_0
(23S RRNA
METHYLTRANSFERASE)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
6 / 12 ASN A 129
GLY A 218
MET A 240
SER A 246
ASN A 248
VAL A 249
None
SAM  A 270 (-2.9A)
SAM  A 270 (-3.5A)
SAM  A 270 (-2.8A)
SAM  A 270 ( 4.9A)
SAM  A 270 ( 4.2A)
0.92A 3nk7A-3gyqA:
30.7
3nk7A-3gyqA:
73.53
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3NK7_A_SAMA770_0
(23S RRNA
METHYLTRANSFERASE)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
9 / 12 ASN A 129
LEU A 195
GLY A 218
GLY A 223
ILE A 238
MET A 240
ASN A 248
VAL A 249
SER A 252
None
SAM  A 270 (-4.1A)
SAM  A 270 (-2.9A)
None
SAM  A 270 (-3.5A)
SAM  A 270 (-3.5A)
SAM  A 270 ( 4.9A)
SAM  A 270 ( 4.2A)
SAM  A 270 (-3.1A)
0.59A 3nk7A-3gyqA:
30.7
3nk7A-3gyqA:
73.53
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3NK7_B_SAMB770_0
(23S RRNA
METHYLTRANSFERASE)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
8 / 12 ASN A 129
GLY A 218
GLY A 223
ILE A 238
MET A 240
SER A 246
LEU A 247
VAL A 249
None
SAM  A 270 (-2.9A)
None
SAM  A 270 (-3.5A)
SAM  A 270 (-3.5A)
SAM  A 270 (-2.8A)
SAM  A 270 (-4.4A)
SAM  A 270 ( 4.2A)
0.92A 3nk7B-3gyqA:
30.7
3nk7B-3gyqA:
73.53
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3NK7_B_SAMB770_0
(23S RRNA
METHYLTRANSFERASE)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
10 / 12 ASN A 129
LEU A 195
PHE A 217
GLY A 218
GLY A 223
ILE A 238
MET A 240
LEU A 247
VAL A 249
SER A 252
None
SAM  A 270 (-4.1A)
None
SAM  A 270 (-2.9A)
None
SAM  A 270 (-3.5A)
SAM  A 270 (-3.5A)
SAM  A 270 (-4.4A)
SAM  A 270 ( 4.2A)
SAM  A 270 (-3.1A)
0.61A 3nk7B-3gyqA:
30.7
3nk7B-3gyqA:
73.53
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3NK7_B_SAMB770_0
(23S RRNA
METHYLTRANSFERASE)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
6 / 12 LEU A 195
PHE A 217
GLU A 220
ILE A 238
MET A 240
SER A 252
SAM  A 270 (-4.1A)
None
None
SAM  A 270 (-3.5A)
SAM  A 270 (-3.5A)
SAM  A 270 (-3.1A)
1.06A 3nk7B-3gyqA:
30.7
3nk7B-3gyqA:
73.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3TQ8_A_TOPA2001_1
(DIHYDROFOLATE
REDUCTASE)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
5 / 9 ILE A 145
ALA A 142
SER A 188
ILE A 185
ILE A 146
None
1.16A 3tq8A-3gyqA:
2.7
3tq8A-3gyqA:
21.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4X3M_A_ADNA301_1
(RNA 2'-O RIBOSE
METHYLTRANSFERASE)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
5 / 9 GLY A 218
ILE A 238
MET A 240
SER A 246
VAL A 249
SAM  A 270 (-2.9A)
SAM  A 270 (-3.5A)
SAM  A 270 (-3.5A)
SAM  A 270 (-2.8A)
SAM  A 270 ( 4.2A)
0.91A 4x3mA-3gyqA:
22.8
4x3mA-3gyqA:
29.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4X3M_B_ADNB301_1
(RNA 2'-O RIBOSE
METHYLTRANSFERASE)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
5 / 9 GLY A 218
ILE A 238
MET A 240
LEU A 247
VAL A 249
SAM  A 270 (-2.9A)
SAM  A 270 (-3.5A)
SAM  A 270 (-3.5A)
SAM  A 270 (-4.4A)
SAM  A 270 ( 4.2A)
0.62A 4x3mB-3gyqA:
22.9
4x3mB-3gyqA:
29.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4X3M_B_ADNB301_1
(RNA 2'-O RIBOSE
METHYLTRANSFERASE)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
5 / 9 ILE A 238
MET A 240
SER A 246
LEU A 247
VAL A 249
SAM  A 270 (-3.5A)
SAM  A 270 (-3.5A)
SAM  A 270 (-2.8A)
SAM  A 270 (-4.4A)
SAM  A 270 ( 4.2A)
0.78A 4x3mB-3gyqA:
22.9
4x3mB-3gyqA:
29.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4YSH_B_GLYB401_0
(GLYCINE OXIDASE)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
4 / 6 PHE A  97
LYS A  95
GLY A  55
TYR A  54
None
1.09A 4yshB-3gyqA:
undetectable
4yshB-3gyqA:
23.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5JVZ_B_FLPB601_1
(PROSTAGLANDIN G/H
SYNTHASE 2)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
5 / 12 VAL A 173
LEU A 171
LEU A 147
GLY A 166
LEU A 160
None
1.14A 5jvzB-3gyqA:
undetectable
5jvzB-3gyqA:
19.07
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5L0Z_A_SAMA304_0
(PROBABLE RNA
METHYLTRANSFERASE,
TRMH FAMILY)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
5 / 12 GLY A 218
GLY A 223
ILE A 238
SER A 246
LEU A 247
SAM  A 270 (-2.9A)
None
SAM  A 270 (-3.5A)
SAM  A 270 (-2.8A)
SAM  A 270 (-4.4A)
0.85A 5l0zA-3gyqA:
22.9
5l0zA-3gyqA:
27.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5L0Z_B_SAMB304_0
(PROBABLE RNA
METHYLTRANSFERASE,
TRMH FAMILY)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
5 / 10 GLY A 218
GLY A 223
ILE A 238
SER A 246
LEU A 247
SAM  A 270 (-2.9A)
None
SAM  A 270 (-3.5A)
SAM  A 270 (-2.8A)
SAM  A 270 (-4.4A)
0.77A 5l0zB-3gyqA:
23.1
5l0zB-3gyqA:
27.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5VOP_B_C2FB3001_0
(5-METHYLTETRAHYDROFO
LATE HOMOCYSTEINE
S-METHYLTRANSFERASE)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
5 / 12 ASN A 264
GLY A 141
VAL A 203
LEU A 195
GLY A 254
None
None
None
SAM  A 270 (-4.1A)
None
1.06A 5vopB-3gyqA:
undetectable
5vopB-3gyqA:
21.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ZHM_B_SAMB301_1
(TRNA
(GUANINE-N(1)-)-METH
YLTRANSFERASE)
3gyq RRNA
(ADENOSINE-2'-O-)-ME
THYLTRANSFERASE

(Streptomyces
cyaneus)
5 / 12 LEU A 195
GLY A 218
GLY A 223
SER A 237
ILE A 238
SAM  A 270 (-4.1A)
SAM  A 270 (-2.9A)
None
SAM  A 270 (-4.3A)
SAM  A 270 (-3.5A)
0.86A 5zhmB-3gyqA:
7.7
5zhmB-3gyqA:
24.43