SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '3ijd'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1IBG_H_OBNH1_1
(IGG2B-KAPPA 40-50
FAB (HEAVY CHAIN))		 3ijd UNCHARACTERIZED
PROTEIN
(Ruminiclostridiu
m
thermocellum) 		4 / 6 LEU A 231
TRP A 230
PHE A 227
VAL A 282
 C2F  A 314 (-3.9A)
None
C2F  A 315 (-3.7A)
C2F  A 315 (-4.7A)
 1.30A 1ibgH-3ijdA:
undetectable		 1ibgH-3ijdA:
18.55
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1J96_A_TESA903_1
(3ALPHA-HYDROXYSTEROI
D DEHYDROGENASE TYPE
3)		 3ijd UNCHARACTERIZED
PROTEIN
(Ruminiclostridiu
m
thermocellum) 		4 / 6 TYR A  78
VAL A 284
ILE A 289
LEU A  49
 None
C2F  A 315 (-4.1A)
C2F  A 315 (-4.5A)
None
 1.12A 1j96A-3ijdA:
9.6		 1j96A-3ijdA:
25.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1UWJ_B_BAXB1723_2
(B-RAF PROTO-ONCOGENE
SERINE/THREONINE-PRO
TEIN KINASE)		 3ijd UNCHARACTERIZED
PROTEIN
(Ruminiclostridiu
m
thermocellum) 		3 / 3 ILE A 170
ASP A 197
PHE A 194
 None
 0.58A 1uwjB-3ijdA:
undetectable		 1uwjB-3ijdA:
20.97
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3IJD_A_C2FA314_0
(UNCHARACTERIZED
PROTEIN)		 3ijd UNCHARACTERIZED
PROTEIN
(Ruminiclostridiu
m
thermocellum) 		12 / 12 THR A  19
TYR A  52
LEU A  54
VAL A 121
GLY A 122
LEU A 134
ILE A 155
ARG A 158
GLN A 183
LEU A 231
ILE A 233
GLU A 280
 C2F  A 314 ( 3.8A)
C2F  A 314 (-3.6A)
None
C2F  A 314 (-4.0A)
C2F  A 314 (-3.5A)
C2F  A 314 ( 4.4A)
None
C2F  A 314 (-3.5A)
C2F  A 314 (-3.4A)
C2F  A 314 (-3.9A)
None
C2F  A 314 (-3.3A)
 0.01A 3ijdA-3ijdA:
52.9		 3ijdA-3ijdA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3IJD_A_C2FA315_0
(UNCHARACTERIZED
PROTEIN)		 3ijd UNCHARACTERIZED
PROTEIN
(Ruminiclostridiu
m
thermocellum) 		11 / 11 THR A  19
LYS A  22
LYS A  29
ILE A  33
ARG A  40
THR A  72
LYS A 223
PHE A 227
VAL A 284
LYS A 286
ILE A 289
 C2F  A 314 ( 3.8A)
C2F  A 315 (-2.6A)
C2F  A 315 (-3.4A)
C2F  A 315 (-3.8A)
C2F  A 315 (-3.4A)
C2F  A 315 (-4.5A)
C2F  A 315 ( 4.5A)
C2F  A 315 (-3.7A)
C2F  A 315 (-4.1A)
None
C2F  A 315 (-4.5A)
 0.00A 3ijdA-3ijdA:
52.9		 3ijdA-3ijdA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3IJD_B_C2FB314_0
(UNCHARACTERIZED
PROTEIN)		 3ijd UNCHARACTERIZED
PROTEIN
(Ruminiclostridiu
m
thermocellum) 		12 / 12 TYR A  52
LEU A  54
CYH A  95
VAL A 121
GLY A 122
LEU A 134
ILE A 155
ARG A 158
ARG A 168
GLN A 183
LEU A 231
ILE A 233
 C2F  A 314 (-3.6A)
None
C2F  A 314 ( 4.1A)
C2F  A 314 (-4.0A)
C2F  A 314 (-3.5A)
C2F  A 314 ( 4.4A)
None
C2F  A 314 (-3.5A)
None
C2F  A 314 (-3.4A)
C2F  A 314 (-3.9A)
None
 0.29A 3ijdB-3ijdA:
50.0		 3ijdB-3ijdA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3IJD_B_C2FB314_1
(UNCHARACTERIZED
PROTEIN)		 3ijd UNCHARACTERIZED
PROTEIN
(Ruminiclostridiu
m
thermocellum) 		3 / 3 THR A  19
LYS A 172
GLU A 280
 C2F  A 314 ( 3.8A)
C2F  A 314 (-2.5A)
C2F  A 314 (-3.3A)
 0.17A 3ijdB-3ijdA:
50.0		 3ijdB-3ijdA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3IJD_B_C2FB315_0
(UNCHARACTERIZED
PROTEIN)		 3ijd UNCHARACTERIZED
PROTEIN
(Ruminiclostridiu
m
thermocellum) 		10 / 12 THR A  19
LYS A  22
LYS A  29
ILE A  33
ILE A  70
THR A  72
LYS A 223
PHE A 227
VAL A 284
LYS A 286
 C2F  A 314 ( 3.8A)
C2F  A 315 (-2.6A)
C2F  A 315 (-3.4A)
C2F  A 315 (-3.8A)
C2F  A 315 ( 4.8A)
C2F  A 315 (-4.5A)
C2F  A 315 ( 4.5A)
C2F  A 315 (-3.7A)
C2F  A 315 (-4.1A)
None
 0.66A 3ijdB-3ijdA:
50.0		 3ijdB-3ijdA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3IJD_B_C2FB315_0
(UNCHARACTERIZED
PROTEIN)		 3ijd UNCHARACTERIZED
PROTEIN
(Ruminiclostridiu
m
thermocellum) 		9 / 12 THR A  19
LYS A  29
ILE A  33
ARG A  40
ILE A  70
THR A  72
PHE A 227
VAL A 284
LYS A 286
 C2F  A 314 ( 3.8A)
C2F  A 315 (-3.4A)
C2F  A 315 (-3.8A)
C2F  A 315 (-3.4A)
C2F  A 315 ( 4.8A)
C2F  A 315 (-4.5A)
C2F  A 315 (-3.7A)
C2F  A 315 (-4.1A)
None
 0.54A 3ijdB-3ijdA:
50.0		 3ijdB-3ijdA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3NK7_B_SAMB770_0
(23S RRNA
METHYLTRANSFERASE)		 3ijd UNCHARACTERIZED
PROTEIN
(Ruminiclostridiu
m
thermocellum) 		6 / 12 ASN A 251
LEU A 216
ILE A 260
LEU A 256
VAL A 254
SER A 257
 None
 1.47A 3nk7B-3ijdA:
3.7		 3nk7B-3ijdA:
21.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3OI8_A_ADNA2_1
(UNCHARACTERIZED
PROTEIN)		 3ijd UNCHARACTERIZED
PROTEIN
(Ruminiclostridiu
m
thermocellum) 		4 / 6 ILE A 260
ASN A 187
PRO A 236
LEU A 256
 None
 1.23A 3oi8A-3ijdA:
undetectable		 3oi8A-3ijdA:
20.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5EWJ_D_QELD503_1
(NMDA GLUTAMATE
RECEPTOR SUBUNIT
GLUTAMATE RECEPTOR
IONOTROPIC, NMDA 2B)		 3ijd UNCHARACTERIZED
PROTEIN
(Ruminiclostridiu
m
thermocellum) 		5 / 12 TYR A  93
LEU A 231
PRO A  75
ILE A  51
THR A 224
 None
C2F  A 314 (-3.9A)
None
None
None
 1.42A 5ewjC-3ijdA:
undetectable
5ewjD-3ijdA:
undetectable		 5ewjC-3ijdA:
22.06
5ewjD-3ijdA:
22.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5YCN_A_8LXA501_0
(PEROXISOME
PROLIFERATOR-ACTIVAT
ED RECEPTOR GAMMA)		 3ijd UNCHARACTERIZED
PROTEIN
(Ruminiclostridiu
m
thermocellum) 		5 / 12 LEU A   2
ILE A  91
GLY A 151
ILE A 213
LEU A 134
 None
None
None
None
C2F  A 314 ( 4.4A)
 0.91A 5ycnA-3ijdA:
undetectable		 5ycnA-3ijdA:
22.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6EMU_A_SAMA501_0
(TRNA
(GUANINE(9)-/ADENINE
(9)-N1)-METHYLTRANSF
ERASE)		 3ijd UNCHARACTERIZED
PROTEIN
(Ruminiclostridiu
m
thermocellum) 		5 / 12 GLY A  48
ILE A  88
ILE A 299
ASP A  45
ILE A  14
 None
 1.00A 6emuA-3ijdA:
3.2		 6emuA-3ijdA:
19.76
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6JNH_A_ASCA202_0
(PHOSPHOPANTETHEINE
ADENYLYLTRANSFERASE)		 3ijd UNCHARACTERIZED
PROTEIN
(Ruminiclostridiu
m
thermocellum) 		3 / 3 ASN A 145
PRO A 110
GLN A 114
 None
 0.92A 6jnhA-3ijdA:
undetectable		 6jnhA-3ijdA:
18.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6JOG_A_ASCA202_0
(PHOSPHOPANTETHEINE
ADENYLYLTRANSFERASE)		 3ijd UNCHARACTERIZED
PROTEIN
(Ruminiclostridiu
m
thermocellum) 		3 / 3 ASN A 145
PRO A 110
GLN A 114
 None
 0.90A 6jogA-3ijdA:
undetectable		 6jogA-3ijdA:
18.99