SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '3ldf'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1P93_D_DEXD4999_1
(GLUCOCORTICOID
RECEPTOR)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
5 / 12 GLY A 109
GLN A 102
PHE A 100
ILE A 131
PHE A 127
None
1.44A 1p93D-3ldfA:
undetectable
1p93D-3ldfA:
20.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1RQP_A_SAMA500_1
(5'-FLUORO-5'-DEOXYAD
ENOSINE SYNTHASE)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
4 / 7 PHE A 366
ASN A 101
SER A 122
ARG A 154
None
1.15A 1rqpB-3ldfA:
undetectable
1rqpB-3ldfA:
21.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1RQP_B_SAMB500_1
(5'-FLUORO-5'-DEOXYAD
ENOSINE SYNTHASE)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
4 / 8 PHE A 366
ASN A 101
SER A 122
ARG A 154
None
1.12A 1rqpC-3ldfA:
undetectable
1rqpC-3ldfA:
21.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1RQP_C_SAMC500_0
(5'-FLUORO-5'-DEOXYAD
ENOSINE SYNTHASE)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
4 / 8 PHE A 366
ASN A 101
SER A 122
ARG A 154
None
1.17A 1rqpA-3ldfA:
undetectable
1rqpA-3ldfA:
21.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1UPF_B_URFB999_1
(URACIL
PHOSPHORIBOSYLTRANSF
ERASE)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
4 / 7 ALA A 211
ILE A 288
ILE A 290
PHE A 226
None
None
None
SAH  A 401 (-4.1A)
0.92A 1upfB-3ldfA:
2.9
1upfB-3ldfA:
19.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2BM9_D_SAMD301_1
(CEPHALOSPORIN
HYDROXYLASE CMCI)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
3 / 3 ASP A 271
ASP A 242
ASN A 299
SAH  A 401 (-3.2A)
SAH  A 401 (-2.8A)
None
0.64A 2bm9D-3ldfA:
8.5
2bm9D-3ldfA:
20.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2IGT_A_SAMA1001_1
(SAM DEPENDENT
METHYLTRANSFERASE)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
3 / 3 ASP A 242
ASP A 271
ASP A 292
SAH  A 401 (-2.8A)
SAH  A 401 (-3.2A)
SAH  A 401 (-3.5A)
0.58A 2igtA-3ldfA:
23.3
2igtA-3ldfA:
23.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2IGT_B_SAMB1002_1
(SAM DEPENDENT
METHYLTRANSFERASE)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
3 / 3 ASP A 242
ASP A 271
ASP A 292
SAH  A 401 (-2.8A)
SAH  A 401 (-3.2A)
SAH  A 401 (-3.5A)
0.63A 2igtB-3ldfA:
23.2
2igtB-3ldfA:
23.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2NYU_B_SAMB201_1
(PUTATIVE RIBOSOMAL
RNA
METHYLTRANSFERASE 2)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
4 / 5 ALA A 225
ASP A 242
ASP A 271
ASP A 292
SAH  A 401 ( 4.8A)
SAH  A 401 (-2.8A)
SAH  A 401 (-3.2A)
SAH  A 401 (-3.5A)
0.73A 2nyuB-3ldfA:
12.2
2nyuB-3ldfA:
19.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2V7U_A_SAMA1299_0
(5'-FLUORO-5'-DEOXY
ADENOSINE SYNTHETASE)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
4 / 8 PHE A 366
ASN A 101
SER A 122
ARG A 154
None
1.10A 2v7uA-3ldfA:
undetectable
2v7uA-3ldfA:
21.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2V7U_B_SAMB1299_1
(5'-FLUORO-5'-DEOXY
ADENOSINE SYNTHETASE)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
4 / 7 PHE A 366
ASN A 101
SER A 122
ARG A 154
None
1.13A 2v7uB-3ldfA:
undetectable
2v7uB-3ldfA:
21.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3APW_B_DP0B190_1
(ALPHA-1-ACID
GLYCOPROTEIN 2)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
5 / 12 PHE A 107
GLN A 102
PHE A 127
SER A  52
TYR A  50
None
1.17A 3apwB-3ldfA:
undetectable
3apwB-3ldfA:
19.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3AX9_A_SALA1341_1
(XANTHINE
DEHYDROGENASE/OXIDAS
E)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
4 / 8 GLU A 178
LEU A 197
VAL A 185
ALA A 225
None
None
None
SAH  A 401 ( 4.8A)
1.00A 3ax9A-3ldfA:
2.5
3ax9A-3ldfA:
14.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3DOU_A_SAMA1_1
(RIBOSOMAL RNA LARGE
SUBUNIT
METHYLTRANSFERASE J)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
3 / 3 ASP A 242
ASP A 271
ASP A 292
SAH  A 401 (-2.8A)
SAH  A 401 (-3.2A)
SAH  A 401 (-3.5A)
0.69A 3douA-3ldfA:
11.8
3douA-3ldfA:
18.86
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3HLW_B_CE3B304_1
(CTX-M-9
EXTENDED-SPECTRUM
BETA-LACTAMASE)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
4 / 5 ASN A  55
THR A 331
SER A 295
SER A 305
None
1.32A 3hlwB-3ldfA:
undetectable
3hlwB-3ldfA:
22.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3V81_A_NVPA901_1
(HIV-1 REVERSE
TRANSCRIPTASE P66
SUBUNIT)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
4 / 8 LEU A  21
VAL A  18
LEU A  38
TYR A  26
None
1.05A 3v81A-3ldfA:
undetectable
3v81A-3ldfA:
22.91
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3V8V_A_SAMA802_0
(RIBOSOMAL RNA LARGE
SUBUNIT
METHYLTRANSFERASE L)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
5 / 9 PHE A 220
TYR A 222
ASP A 242
ASP A 271
PRO A 294
SAH  A 401 (-4.6A)
SAH  A 401 (-4.8A)
SAH  A 401 (-2.8A)
SAH  A 401 (-3.2A)
SAH  A 401 ( 4.0A)
0.62A 3v8vA-3ldfA:
28.9
3v8vA-3ldfA:
21.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3V8V_B_SAMB802_0
(RIBOSOMAL RNA LARGE
SUBUNIT
METHYLTRANSFERASE L)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
6 / 12 ARG A 203
PHE A 220
TYR A 222
ASP A 271
ASP A 292
PRO A 294
None
SAH  A 401 (-4.6A)
SAH  A 401 (-4.8A)
SAH  A 401 (-3.2A)
SAH  A 401 (-3.5A)
SAH  A 401 ( 4.0A)
0.54A 3v8vB-3ldfA:
29.0
3v8vB-3ldfA:
21.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4DF3_A_SAMA301_1
(FIBRILLARIN-LIKE
RRNA/TRNA
2'-O-METHYLTRANSFERA
SE)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
3 / 3 TYR A 115
THR A 193
GLU A 178
None
0.83A 4df3A-3ldfA:
13.3
4df3A-3ldfA:
21.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4DF3_B_SAMB301_1
(FIBRILLARIN-LIKE
RRNA/TRNA
2'-O-METHYLTRANSFERA
SE)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
3 / 3 TYR A 115
THR A 193
GLU A 178
None
0.83A 4df3B-3ldfA:
13.3
4df3B-3ldfA:
21.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4DMG_A_SAMA401_0
(PUTATIVE
UNCHARACTERIZED
PROTEIN TTHA1493)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
5 / 12 ARG A 203
TYR A 222
ASP A 242
ASP A 292
PRO A 294
None
SAH  A 401 (-4.8A)
SAH  A 401 (-2.8A)
SAH  A 401 (-3.5A)
SAH  A 401 ( 4.0A)
0.77A 4dmgA-3ldfA:
36.4
4dmgA-3ldfA:
24.76
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4DMG_B_SAMB401_0
(PUTATIVE
UNCHARACTERIZED
PROTEIN TTHA1493)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
5 / 11 ARG A 203
TYR A 222
ASP A 242
ASP A 292
PRO A 294
None
SAH  A 401 (-4.8A)
SAH  A 401 (-2.8A)
SAH  A 401 (-3.5A)
SAH  A 401 ( 4.0A)
0.82A 4dmgB-3ldfA:
36.8
4dmgB-3ldfA:
24.76
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4E47_A_SAMA401_0
(HISTONE-LYSINE
N-METHYLTRANSFERASE
SETD7)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
5 / 11 ALA A 231
GLY A 233
GLY A 180
HIS A 254
TYR A 183
None
1.07A 4e47A-3ldfA:
undetectable
4e47A-3ldfA:
19.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4E47_B_SAMB800_0
(HISTONE-LYSINE
N-METHYLTRANSFERASE
SETD7)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
5 / 11 ALA A 231
GLY A 233
GLY A 180
HIS A 254
TYR A 183
None
1.11A 4e47B-3ldfA:
undetectable
4e47B-3ldfA:
19.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4JDS_A_SAMA401_0
(HISTONE-LYSINE
N-METHYLTRANSFERASE
SETD7)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
5 / 11 ALA A 231
GLY A 233
GLY A 180
HIS A 254
TYR A 183
None
1.09A 4jdsA-3ldfA:
undetectable
4jdsA-3ldfA:
19.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4JDS_B_SAMB401_0
(HISTONE-LYSINE
N-METHYLTRANSFERASE
SETD7)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
5 / 11 ALA A 231
GLY A 233
GLY A 180
HIS A 254
TYR A 183
None
1.07A 4jdsB-3ldfA:
undetectable
4jdsB-3ldfA:
19.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4MGH_A_ACTA1320_0
(PHOSPHORIBOSYLFORMYL
GLYCINAMIDINE
SYNTHASE)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
4 / 5 VAL A 385
LEU A 318
ILE A 327
LEU A 326
None
0.83A 4mghA-3ldfA:
undetectable
4mghA-3ldfA:
14.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4NKX_C_STRC601_2
(STEROID
17-ALPHA-HYDROXYLASE
/17,20 LYASE)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
4 / 5 ILE A 153
ASP A 113
GLU A 151
VAL A 128
None
1.22A 4nkxC-3ldfA:
undetectable
4nkxC-3ldfA:
22.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4NKX_D_STRD601_2
(STEROID
17-ALPHA-HYDROXYLASE
/17,20 LYASE)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
4 / 5 ILE A 153
ASP A 113
GLU A 151
VAL A 128
None
1.21A 4nkxD-3ldfA:
undetectable
4nkxD-3ldfA:
22.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5E5J_A_017A201_3
(PROTEASE)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
3 / 3 ASP A  25
VAL A  58
LEU A  29
None
0.61A 5e5jB-3ldfA:
undetectable
5e5jB-3ldfA:
13.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5I73_A_68PA701_1
(SODIUM-DEPENDENT
SEROTONIN
TRANSPORTER)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
5 / 12 ILE A 327
ALA A 329
PHE A 349
GLY A 325
VAL A 385
None
0.96A 5i73A-3ldfA:
undetectable
5i73A-3ldfA:
21.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5K7U_A_SAMA601_1
(N6-ADENOSINE-METHYLT
RANSFERASE 70 KDA
SUBUNIT)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
3 / 3 ASP A 372
ASN A 101
GLN A 102
None
0.48A 5k7uA-3ldfA:
undetectable
5k7uA-3ldfA:
18.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5KM8_B_L8PB201_1
(HISTIDINE TRIAD
NUCLEOTIDE-BINDING
PROTEIN 2,
MITOCHONDRIAL)
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans)
4 / 8 GLN A  54
ASN A 335
ALA A 334
SER A 374
None
1.14A 5km8A-3ldfA:
undetectable
5km8B-3ldfA:
undetectable
5km8A-3ldfA:
17.65
5km8B-3ldfA:
17.65