SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '3md0'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1BDW_B_DVAB8_0
(GRAMICIDIN A)		 3md0 ARGININE/ORNITHINE
TRANSPORT SYSTEM
ATPASE
(Mycobacterium
tuberculosis) 		3 / 3 VAL A 294
VAL A 290
TRP A 295
 None
 0.84A 1bdwA-3md0A:
undetectable
1bdwB-3md0A:
undetectable		 1bdwA-3md0A:
6.67
1bdwB-3md0A:
6.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1FDS_A_ESTA350_1
(17-BETA-HYDROXYSTERO
ID-DEHYDROGENASE)		 3md0 ARGININE/ORNITHINE
TRANSPORT SYSTEM
ATPASE
(Mycobacterium
tuberculosis) 		5 / 12 VAL A 176
LEU A 178
GLY A  62
SER A  72
MET A 242
 None
None
None
GDP  A 335 (-3.1A)
None
 1.09A 1fdsA-3md0A:
4.8		 1fdsA-3md0A:
26.55
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1FDU_C_ESTC353_1
(17-BETA-HYDROXYSTERO
ID DEHYDROGENASE)		 3md0 ARGININE/ORNITHINE
TRANSPORT SYSTEM
ATPASE
(Mycobacterium
tuberculosis) 		5 / 12 VAL A 176
LEU A 178
GLY A  62
SER A  72
MET A 242
 None
None
None
GDP  A 335 (-3.1A)
None
 1.19A 1fduC-3md0A:
3.8		 1fduC-3md0A:
25.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1M8D_A_CLWA906_1
(INDUCIBLE NITRIC
OXIDE SYNTHASE)		 3md0 ARGININE/ORNITHINE
TRANSPORT SYSTEM
ATPASE
(Mycobacterium
tuberculosis) 		4 / 5 PRO A 237
VAL A 201
TYR A 229
GLU A 196
 None
 1.45A 1m8dA-3md0A:
undetectable		 1m8dA-3md0A:
20.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1M8D_B_CLWB907_1
(INDUCIBLE NITRIC
OXIDE SYNTHASE)		 3md0 ARGININE/ORNITHINE
TRANSPORT SYSTEM
ATPASE
(Mycobacterium
tuberculosis) 		4 / 5 PRO A 237
VAL A 201
TYR A 229
GLU A 196
 None
 1.45A 1m8dB-3md0A:
undetectable		 1m8dB-3md0A:
20.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1M9J_A_CLWA906_1
(ENDOTHELIAL
NITRIC-OXIDE
SYNTHASE)		 3md0 ARGININE/ORNITHINE
TRANSPORT SYSTEM
ATPASE
(Mycobacterium
tuberculosis) 		4 / 5 PRO A 237
VAL A 201
TYR A 229
GLU A 196
 None
 1.35A 1m9jA-3md0A:
0.9		 1m9jA-3md0A:
21.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1M9J_B_CLWB907_1
(ENDOTHELIAL
NITRIC-OXIDE
SYNTHASE)		 3md0 ARGININE/ORNITHINE
TRANSPORT SYSTEM
ATPASE
(Mycobacterium
tuberculosis) 		4 / 5 PRO A 237
VAL A 201
TYR A 229
GLU A 196
 None
 1.42A 1m9jB-3md0A:
undetectable		 1m9jB-3md0A:
21.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1R30_B_SAMB501_0
(BIOTIN SYNTHASE)		 3md0 ARGININE/ORNITHINE
TRANSPORT SYSTEM
ATPASE
(Mycobacterium
tuberculosis) 		5 / 12 HIS A 260
ILE A 156
LEU A  92
VAL A  91
LEU A  78
 None
 1.19A 1r30B-3md0A:
undetectable		 1r30B-3md0A:
23.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1VPT_A_SAMA400_1
(VP39)		 3md0 ARGININE/ORNITHINE
TRANSPORT SYSTEM
ATPASE
(Mycobacterium
tuberculosis) 		3 / 3 ASP A 173
ARG A  60
ASP A 271
 None
 0.96A 1vptA-3md0A:
undetectable		 1vptA-3md0A:
20.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2BXG_A_IBPA2001_1
(SERUM ALBUMIN)		 3md0 ARGININE/ORNITHINE
TRANSPORT SYSTEM
ATPASE
(Mycobacterium
tuberculosis) 		5 / 11 LEU A 221
VAL A 194
GLY A 193
ALA A 198
LEU A 177
 None
 1.20A 2bxgA-3md0A:
undetectable		 2bxgA-3md0A:
20.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2OC8_A_HU5A999_1
(HEPATITIS C VIRUS)		 3md0 ARGININE/ORNITHINE
TRANSPORT SYSTEM
ATPASE
(Mycobacterium
tuberculosis) 		5 / 12 ILE A 154
LEU A 146
GLY A 150
ALA A  90
VAL A  91
 None
 0.97A 2oc8A-3md0A:
undetectable		 2oc8A-3md0A:
19.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2OIQ_A_STIA1001_2
(PROTO-ONCOGENE
TYROSINE-PROTEIN
KINASE SRC)		 3md0 ARGININE/ORNITHINE
TRANSPORT SYSTEM
ATPASE
(Mycobacterium
tuberculosis) 		4 / 5 LEU A 250
VAL A 263
LEU A 264
ARG A 236
 None
None
None
UNX  A 339 ( 3.6A)
 1.06A 2oiqA-3md0A:
undetectable		 2oiqA-3md0A:
24.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3OGP_A_017A200_1
(FIV PROTEASE)		 3md0 ARGININE/ORNITHINE
TRANSPORT SYSTEM
ATPASE
(Mycobacterium
tuberculosis) 		5 / 9 ALA A 198
ASP A 199
ILE A 200
GLY A  62
LEU A 177
 None
 1.00A 3ogpA-3md0A:
undetectable		 3ogpA-3md0A:
16.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ROZ_A_NCAA266_0
(APOLIPOPROTEIN
A-I-BINDING PROTEIN)		 3md0 ARGININE/ORNITHINE
TRANSPORT SYSTEM
ATPASE
(Mycobacterium
tuberculosis) 		4 / 6 ASP A 288
LEU A 285
ALA A 167
LEU A 132
 None
 1.11A 3rozA-3md0A:
undetectable		 3rozA-3md0A:
19.55
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4PEV_C_ADNC501_1
(MEMBRANE LIPOPROTEIN
FAMILY PROTEIN)		 3md0 ARGININE/ORNITHINE
TRANSPORT SYSTEM
ATPASE
(Mycobacterium
tuberculosis) 		5 / 12 VAL A 263
PHE A 270
ASP A 173
GLY A 268
ASP A 271
 None
 1.40A 4pevC-3md0A:
4.7		 4pevC-3md0A:
24.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4PGF_A_ADNA502_2
(ADENOSYLHOMOCYSTEINA
SE)		 3md0 ARGININE/ORNITHINE
TRANSPORT SYSTEM
ATPASE
(Mycobacterium
tuberculosis) 		4 / 6 GLU A 157
THR A 158
THR A 174
LEU A 178
 None
 1.14A 4pgfA-3md0A:
4.0		 4pgfA-3md0A:
20.78
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5AXA_A_ADNA502_2
(ADENOSYLHOMOCYSTEINA
SE)		 3md0 ARGININE/ORNITHINE
TRANSPORT SYSTEM
ATPASE
(Mycobacterium
tuberculosis) 		4 / 5 GLU A 157
THR A 158
THR A 174
LEU A 253
 None
 1.29A 5axaA-3md0A:
undetectable		 5axaA-3md0A:
22.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5AXA_C_ADNC502_2
(ADENOSYLHOMOCYSTEINA
SE)		 3md0 ARGININE/ORNITHINE
TRANSPORT SYSTEM
ATPASE
(Mycobacterium
tuberculosis) 		4 / 5 GLU A 157
THR A 158
THR A 174
LEU A 253
 None
 1.30A 5axaC-3md0A:
undetectable		 5axaC-3md0A:
22.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5HQA_A_ACRA705_2
(ALPHA-GLUCOSIDASE)		 3md0 ARGININE/ORNITHINE
TRANSPORT SYSTEM
ATPASE
(Mycobacterium
tuberculosis) 		4 / 8 TRP A 254
GLU A 252
HIS A  81
THR A  64
 None
 1.26A 5hqaA-3md0A:
undetectable		 5hqaA-3md0A:
20.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5JCN_B_ASCB502_0
(OS09G0567300 PROTEIN)		 3md0 ARGININE/ORNITHINE
TRANSPORT SYSTEM
ATPASE
(Mycobacterium
tuberculosis) 		4 / 6 GLU A 147
GLY A  56
ARG A  60
PHE A 270
 None
 1.29A 5jcnB-3md0A:
2.2		 5jcnB-3md0A:
24.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5JW1_A_CELA602_1
(PROSTAGLANDIN G/H
SYNTHASE 2)		 3md0 ARGININE/ORNITHINE
TRANSPORT SYSTEM
ATPASE
(Mycobacterium
tuberculosis) 		6 / 12 VAL A 201
LEU A 221
ALA A 244
VAL A  69
GLY A  65
LEU A 187
 None
None
GDP  A 335 (-4.1A)
GDP  A 335 ( 4.6A)
None
None
 1.48A 5jw1A-3md0A:
undetectable		 5jw1A-3md0A:
18.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5OTR_A_ACTA402_0
(CASEIN KINASE II
SUBUNIT ALPHA)		 3md0 ARGININE/ORNITHINE
TRANSPORT SYSTEM
ATPASE
(Mycobacterium
tuberculosis) 		4 / 5 VAL A 144
ASP A  54
PRO A  53
ALA A 148
 None
 1.03A 5otrA-3md0A:
undetectable		 5otrA-3md0A:
20.71