SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '3njr'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1K6C_B_MK1B902_1
(POL POLYPROTEIN)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
5 / 10 ARG A  86
VAL A 105
ILE A 107
GLY A 109
GLY A  42
None
None
None
SAH  A 300 ( 3.8A)
SAH  A 300 (-3.1A)
1.10A 1k6cA-3njrA:
undetectable
1k6cA-3njrA:
22.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2A58_B_RBFB301_1
(6,7-DIMETHYL-8-RIBIT
YLLUMAZINE SYNTHASE)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
5 / 12 ILE A  76
LEU A  81
ALA A  87
GLY A  46
SER A  47
None
None
None
SAH  A 300 (-4.6A)
SAH  A 300 (-2.6A)
1.17A 2a58A-3njrA:
undetectable
2a58B-3njrA:
undetectable
2a58A-3njrA:
23.33
2a58B-3njrA:
23.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2A58_C_RBFC302_1
(6,7-DIMETHYL-8-RIBIT
YLLUMAZINE SYNTHASE)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
5 / 12 ILE A  76
LEU A  81
ALA A  87
GLY A  46
SER A  47
None
None
None
SAH  A 300 (-4.6A)
SAH  A 300 (-2.6A)
1.17A 2a58B-3njrA:
undetectable
2a58C-3njrA:
undetectable
2a58B-3njrA:
23.33
2a58C-3njrA:
23.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2A58_E_RBFE304_1
(6,7-DIMETHYL-8-RIBIT
YLLUMAZINE SYNTHASE)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
5 / 12 ILE A  76
LEU A  81
ALA A  87
GLY A  46
SER A  47
None
None
None
SAH  A 300 (-4.6A)
SAH  A 300 (-2.6A)
1.17A 2a58D-3njrA:
undetectable
2a58E-3njrA:
undetectable
2a58D-3njrA:
23.33
2a58E-3njrA:
23.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2VDV_E_SAME1287_0
(TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
5 / 12 GLY A  42
GLY A  44
GLU A  63
ALA A  92
THR A  18
SAH  A 300 (-3.1A)
SAH  A 300 (-3.4A)
SAH  A 300 (-2.6A)
SAH  A 300 (-4.2A)
SAH  A 300 (-3.8A)
0.69A 2vdvE-3njrA:
10.1
2vdvE-3njrA:
22.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2VDV_E_SAME1287_0
(TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
5 / 12 GLY A  42
GLY A  44
GLU A  63
ARG A  65
THR A  18
SAH  A 300 (-3.1A)
SAH  A 300 (-3.4A)
SAH  A 300 (-2.6A)
None
SAH  A 300 (-3.8A)
1.02A 2vdvE-3njrA:
10.1
2vdvE-3njrA:
22.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2VDV_F_SAMF1287_0
(TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
5 / 11 GLY A  42
GLY A  44
GLU A  63
ALA A  92
THR A  18
SAH  A 300 (-3.1A)
SAH  A 300 (-3.4A)
SAH  A 300 (-2.6A)
SAH  A 300 (-4.2A)
SAH  A 300 (-3.8A)
0.69A 2vdvF-3njrA:
10.0
2vdvF-3njrA:
22.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2VDV_F_SAMF1287_0
(TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
5 / 11 GLY A  42
GLY A  44
GLU A  63
ARG A  65
THR A  18
SAH  A 300 (-3.1A)
SAH  A 300 (-3.4A)
SAH  A 300 (-2.6A)
None
SAH  A 300 (-3.8A)
1.01A 2vdvF-3njrA:
10.0
2vdvF-3njrA:
22.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3CKK_A_SAMA301_0
(TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
5 / 12 GLY A  42
GLY A  44
GLU A  63
ALA A  92
THR A  18
SAH  A 300 (-3.1A)
SAH  A 300 (-3.4A)
SAH  A 300 (-2.6A)
SAH  A 300 (-4.2A)
SAH  A 300 (-3.8A)
0.79A 3ckkA-3njrA:
11.2
3ckkA-3njrA:
23.05
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3DXY_A_SAMA1_0
(TRNA
(GUANINE-N(7)-)-METH
YLTRANSFERASE)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
5 / 11 GLY A  42
GLY A  44
ILE A  62
GLU A  63
ALA A  92
SAH  A 300 (-3.1A)
SAH  A 300 (-3.4A)
None
SAH  A 300 (-2.6A)
SAH  A 300 (-4.2A)
0.77A 3dxyA-3njrA:
12.0
3dxyA-3njrA:
22.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3IA4_C_MTXC164_2
(DIHYDROFOLATE
REDUCTASE)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
4 / 4 ILE A  41
ARG A 148
ILE A 107
THR A  91
None
None
None
SAH  A 300 (-3.9A)
1.16A 3ia4C-3njrA:
undetectable
3ia4C-3njrA:
20.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3JB2_A_SAMA1101_0
(STRUCTURAL PROTEIN
VP3)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
5 / 12 GLU A  63
PRO A  64
GLY A  46
ARG A  23
GLU A   8
SAH  A 300 (-2.6A)
SAH  A 300 (-4.4A)
SAH  A 300 (-4.6A)
None
None
1.26A 3jb2A-3njrA:
5.3
3jb2A-3njrA:
11.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3JB2_A_SAMA1101_0
(STRUCTURAL PROTEIN
VP3)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
5 / 12 GLU A  63
PRO A  64
GLY A  46
ILE A  17
GLU A   8
SAH  A 300 (-2.6A)
SAH  A 300 (-4.4A)
SAH  A 300 (-4.6A)
SAH  A 300 (-4.8A)
None
1.29A 3jb2A-3njrA:
5.3
3jb2A-3njrA:
11.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3NXU_A_RITA600_2
(CYTOCHROME P450 3A4)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
4 / 7 ILE A  62
LEU A  38
THR A  18
THR A 127
None
None
SAH  A 300 (-3.8A)
None
0.98A 3nxuA-3njrA:
undetectable
3nxuA-3njrA:
18.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3W9T_B_W9TB501_1
(HEMOLYTIC LECTIN
CEL-III)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
4 / 5 ASP A  14
SER A  45
GLY A  44
ASP A  67
None
SAH  A 300 (-3.1A)
SAH  A 300 (-3.4A)
None
1.41A 3w9tB-3njrA:
undetectable
3w9tB-3njrA:
17.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3W9T_C_W9TC1003_1
(HEMOLYTIC LECTIN
CEL-III)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
4 / 5 ASP A  14
SER A  45
GLY A  44
ASP A  67
None
SAH  A 300 (-3.1A)
SAH  A 300 (-3.4A)
None
1.41A 3w9tC-3njrA:
undetectable
3w9tC-3njrA:
17.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3W9T_D_W9TD501_1
(HEMOLYTIC LECTIN
CEL-III)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
4 / 5 ASP A  14
SER A  45
GLY A  44
ASP A  67
None
SAH  A 300 (-3.1A)
SAH  A 300 (-3.4A)
None
1.41A 3w9tD-3njrA:
undetectable
3w9tD-3njrA:
17.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4D39_B_MTLB870_0
(NITRIC OXIDE
SYNTHASE,
ENDOTHELIAL)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
4 / 7 SER A  45
ASN A  75
ILE A  72
ASP A  40
SAH  A 300 (-3.1A)
None
None
SAH  A 300 ( 4.8A)
1.13A 4d39B-3njrA:
undetectable
4d39B-3njrA:
20.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4QWU_K_BO2K301_1
(PROTEASOME SUBUNIT
BETA TYPE-5
PROTEASOME SUBUNIT
BETA TYPE-6)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
5 / 9 ALA A  92
THR A  91
ALA A  95
GLY A 109
GLY A  42
SAH  A 300 (-4.2A)
SAH  A 300 (-3.9A)
None
SAH  A 300 ( 3.8A)
SAH  A 300 (-3.1A)
0.94A 4qwuK-3njrA:
undetectable
4qwuL-3njrA:
undetectable
4qwuK-3njrA:
18.92
4qwuL-3njrA:
20.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4QWU_Y_BO2Y301_1
(PROTEASOME SUBUNIT
BETA TYPE-5
PROTEASOME SUBUNIT
BETA TYPE-6)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
5 / 9 ALA A  92
THR A  91
ALA A  95
GLY A 109
GLY A  42
SAH  A 300 (-4.2A)
SAH  A 300 (-3.9A)
None
SAH  A 300 ( 3.8A)
SAH  A 300 (-3.1A)
0.87A 4qwuY-3njrA:
undetectable
4qwuZ-3njrA:
undetectable
4qwuY-3njrA:
18.92
4qwuZ-3njrA:
20.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4UCI_A_SAMA2409_0
(RNA-DIRECTED RNA
POLYMERASE L)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
5 / 12 THR A  18
GLY A  42
GLY A  44
GLY A  46
ALA A  92
SAH  A 300 (-3.8A)
SAH  A 300 (-3.1A)
SAH  A 300 (-3.4A)
SAH  A 300 (-4.6A)
SAH  A 300 (-4.2A)
0.97A 4uciA-3njrA:
7.8
4uciA-3njrA:
19.86
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4UCI_B_SAMB2409_0
(RNA-DIRECTED RNA
POLYMERASE L)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
5 / 12 THR A  18
GLY A  42
GLY A  44
GLY A  46
ALA A  92
SAH  A 300 (-3.8A)
SAH  A 300 (-3.1A)
SAH  A 300 (-3.4A)
SAH  A 300 (-4.6A)
SAH  A 300 (-4.2A)
0.96A 4uciB-3njrA:
7.8
4uciB-3njrA:
19.86
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4Z3O_F_MFXF101_1
(DNA TOPOISOMERASE 4
SUBUNIT
B,PARE30-PARC55
FUSED TOPO IV FROM
S. PNEUMONIAE
E-SITE DNA)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
4 / 5 ARG A  68
GLY A  42
GLU A  63
SER A 138
SAH  A 300 (-3.5A)
SAH  A 300 (-3.1A)
SAH  A 300 (-2.6A)
None
1.26A 4z3oA-3njrA:
undetectable
4z3oB-3njrA:
undetectable
4z3oA-3njrA:
15.46
4z3oB-3njrA:
15.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5FA8_A_SAMA301_1
(RIBOSOMAL PROTEIN
L11
METHYLTRANSFERASE,
PUTATIVE)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
3 / 3 THR A  18
ASP A  40
GLU A  63
SAH  A 300 (-3.8A)
SAH  A 300 ( 4.8A)
SAH  A 300 (-2.6A)
0.74A 5fa8A-3njrA:
18.1
5fa8A-3njrA:
23.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5IZF_E_AZ1E2_1
(CAMP-DEPENDENT
PROTEIN KINASE
CATALYTIC SUBUNIT
ALPHA
6J9-ZEU-DAR-ACA-DAR-
NH2)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
4 / 7 GLY A 108
GLY A 111
SER A 112
LEU A 119
SAH  A 300 ( 4.8A)
None
None
None
0.70A 5izfA-3njrA:
undetectable
5izfA-3njrA:
19.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5IZF_E_AZ1E2_1
(CAMP-DEPENDENT
PROTEIN KINASE
CATALYTIC SUBUNIT
ALPHA
6J9-ZEU-DAR-ACA-DAR-
NH2)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
4 / 7 GLY A 111
SER A 112
LEU A 119
GLU A  63
None
None
None
SAH  A 300 (-2.6A)
0.78A 5izfA-3njrA:
undetectable
5izfA-3njrA:
19.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6FOS_B_PQNB2002_1
(PHOTOSYSTEM I P700
CHLOROPHYLL A
APOPROTEIN A2)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
4 / 6 ARG A 128
ALA A 104
LEU A  30
ALA A  29
None
1.17A 6fosB-3njrA:
undetectable
6fosB-3njrA:
17.30
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6NJ9_K_SAMK500_0
(HISTONE-LYSINE
N-METHYLTRANSFERASE,
H3 LYSINE-79
SPECIFIC)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
5 / 12 ASP A  40
GLY A  42
GLY A  44
VAL A  48
PHE A 106
SAH  A 300 ( 4.8A)
SAH  A 300 (-3.1A)
SAH  A 300 (-3.4A)
None
None
0.68A 6nj9K-3njrA:
9.6
6nj9K-3njrA:
18.07
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6NQA_K_SAMK500_0
(HISTONE-LYSINE
N-METHYLTRANSFERASE,
H3 LYSINE-79
SPECIFIC)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
5 / 10 ASP A  40
GLY A  42
GLY A  44
VAL A  48
GLU A  63
SAH  A 300 ( 4.8A)
SAH  A 300 (-3.1A)
SAH  A 300 (-3.4A)
None
SAH  A 300 (-2.6A)
0.89A 6nqaK-3njrA:
11.0
6nqaK-3njrA:
18.07
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6NQA_K_SAMK500_0
(HISTONE-LYSINE
N-METHYLTRANSFERASE,
H3 LYSINE-79
SPECIFIC)
3njr PRECORRIN-6Y
METHYLASE

(Rhodobacter
capsulatus)
5 / 10 THR A  18
ASP A  40
GLY A  42
GLY A  44
VAL A  48
SAH  A 300 (-3.8A)
SAH  A 300 ( 4.8A)
SAH  A 300 (-3.1A)
SAH  A 300 (-3.4A)
None
0.89A 6nqaK-3njrA:
11.0
6nqaK-3njrA:
18.07