SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '3nqp'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1GRM_A_DVAA6_0
(GRAMICIDIN A)		 3nqp SUSD SUPERFAMILY
PROTEIN
(Bacteroides
fragilis) 		3 / 3 ALA A 124
VAL A 126
TRP A  42
 None
 0.89A 1grmA-3nqpA:
undetectable		 1grmA-3nqpA:
6.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1GRM_B_DVAB6_0
(GRAMICIDIN A)		 3nqp SUSD SUPERFAMILY
PROTEIN
(Bacteroides
fragilis) 		3 / 3 ALA A 124
VAL A 126
TRP A  42
 None
 0.89A 1grmB-3nqpA:
undetectable		 1grmB-3nqpA:
6.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1KQE_A_DVAA6_0
(MINI-GRAMICIDIN A)		 3nqp SUSD SUPERFAMILY
PROTEIN
(Bacteroides
fragilis) 		3 / 3 ALA A 414
VAL A 409
TRP A 408
 None
 0.88A 1kqeA-3nqpA:
undetectable
1kqeE-3nqpA:
undetectable		 1kqeA-3nqpA:
2.11
1kqeE-3nqpA:
2.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1KQE_B_DVAB6_0
(MINI-GRAMICIDIN A)		 3nqp SUSD SUPERFAMILY
PROTEIN
(Bacteroides
fragilis) 		3 / 3 ALA A 414
VAL A 409
TRP A 408
 None
 0.85A 1kqeB-3nqpA:
undetectable
1kqeD-3nqpA:
undetectable		 1kqeB-3nqpA:
2.11
1kqeD-3nqpA:
2.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1KQE_D_DVAD6_0
(MINI-GRAMICIDIN A)		 3nqp SUSD SUPERFAMILY
PROTEIN
(Bacteroides
fragilis) 		3 / 3 TRP A 408
ALA A 414
VAL A 409
 None
 0.87A 1kqeB-3nqpA:
undetectable
1kqeD-3nqpA:
undetectable		 1kqeB-3nqpA:
2.11
1kqeD-3nqpA:
2.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1KQE_E_DVAE6_0
(MINI-GRAMICIDIN A)		 3nqp SUSD SUPERFAMILY
PROTEIN
(Bacteroides
fragilis) 		3 / 3 TRP A 408
ALA A 414
VAL A 409
 None
 0.85A 1kqeA-3nqpA:
undetectable
1kqeE-3nqpA:
undetectable		 1kqeA-3nqpA:
2.11
1kqeE-3nqpA:
2.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ZEA_A_DHIA6_0
(MONOCLONAL
ANTI-CHOLERA TOXIN
IGG1 KAPPA ANTIBODY,
H CHAIN
MONOCLONAL
ANTI-CHOLERA TOXIN
IGG1 KAPPA ANTIBODY,
L CHAIN
SHORT SYNTHETIC
D-AMINO ACID PEPTIDE
D2)		 3nqp SUSD SUPERFAMILY
PROTEIN
(Bacteroides
fragilis) 		3 / 3 TRP A 408
ARG A 405
PHE A 470
 None
 1.23A 1zeaH-3nqpA:
undetectable
1zeaL-3nqpA:
undetectable		 1zeaH-3nqpA:
16.33
1zeaL-3nqpA:
17.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2AOU_B_CQAB401_0
(HISTAMINE
N-METHYLTRANSFERASE)		 3nqp SUSD SUPERFAMILY
PROTEIN
(Bacteroides
fragilis) 		4 / 7 GLY A 161
ASP A 246
TYR A 156
THR A 192
 None
 1.15A 2aouB-3nqpA:
undetectable		 2aouB-3nqpA:
20.08
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2REZ_A_ACTA156_0
(MULTIFUNCTIONAL
CYCLASE-DEHYDRATASE-
3-O-METHYL
TRANSFERASE TCMN)		 3nqp SUSD SUPERFAMILY
PROTEIN
(Bacteroides
fragilis) 		4 / 7 GLU A 521
THR A 104
ARG A 184
LEU A 525
 None
 1.46A 2rezA-3nqpA:
undetectable		 2rezA-3nqpA:
14.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ZZM_A_SAMA401_0
(UNCHARACTERIZED
PROTEIN MJ0883)		 3nqp SUSD SUPERFAMILY
PROTEIN
(Bacteroides
fragilis) 		5 / 12 LEU A 507
GLY A  76
ILE A  79
ASN A 344
LEU A  96
 None
None
EDO  A1004 ( 3.8A)
None
None
 1.18A 2zzmA-3nqpA:
undetectable		 2zzmA-3nqpA:
19.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ELZ_B_CHDB153_0
(ILEAL BILE
ACID-BINDING PROTEIN)		 3nqp SUSD SUPERFAMILY
PROTEIN
(Bacteroides
fragilis) 		4 / 6 ILE A 158
THR A  67
PHE A 403
PHE A 150
 None
 1.13A 3elzB-3nqpA:
undetectable		 3elzB-3nqpA:
14.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3TGV_B_BEZB160_0
(HEME-BINDING PROTEIN
HUTZ)		 3nqp SUSD SUPERFAMILY
PROTEIN
(Bacteroides
fragilis) 		4 / 4 LEU A 260
GLY A 232
LEU A 236
GLU A 233
 None
 1.01A 3tgvB-3nqpA:
undetectable		 3tgvB-3nqpA:
14.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4FR0_A_SAMA401_0
(ARSENIC
METHYLTRANSFERASE)		 3nqp SUSD SUPERFAMILY
PROTEIN
(Bacteroides
fragilis) 		5 / 12 GLY A  75
PHE A 470
ILE A 471
ASN A 344
VAL A 347
 None
 1.01A 4fr0A-3nqpA:
undetectable		 4fr0A-3nqpA:
20.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4G0V_A_MIXA1301_1
(DNA TOPOISOMERASE
2-BETA)		 3nqp SUSD SUPERFAMILY
PROTEIN
(Bacteroides
fragilis) 		4 / 7 GLY A 328
ASN A 323
GLU A 325
GLN A 334
 None
 0.98A 4g0vA-3nqpA:
undetectable		 4g0vA-3nqpA:
21.30
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4G0V_D_MIXD101_1
(DNA TOPOISOMERASE
2-BETA)		 3nqp SUSD SUPERFAMILY
PROTEIN
(Bacteroides
fragilis) 		4 / 6 GLY A 328
ASN A 323
GLU A 325
GLN A 334
 None
 1.13A 4g0vB-3nqpA:
undetectable		 4g0vB-3nqpA:
21.30
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4NKV_D_AERD601_2
(STEROID
17-ALPHA-HYDROXYLASE
/17,20 LYASE)		 3nqp SUSD SUPERFAMILY
PROTEIN
(Bacteroides
fragilis) 		4 / 5 GLY A 421
ASP A 422
GLU A 415
VAL A 409
 None
 1.10A 4nkvD-3nqpA:
undetectable		 4nkvD-3nqpA:
19.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4OAD_A_CLMA205_0
(GNAT SUPERFAMILY
ACETYLTRANSFERASE
PA4794)		 3nqp SUSD SUPERFAMILY
PROTEIN
(Bacteroides
fragilis) 		5 / 12 GLU A 233
CYH A 229
ALA A 149
GLY A 146
LEU A 147
 None
 1.37A 4oadA-3nqpA:
undetectable		 4oadA-3nqpA:
15.07
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4XUM_A_IMNA502_1
(PEROXISOME
PROLIFERATOR-ACTIVAT
ED RECEPTOR GAMMA)		 3nqp SUSD SUPERFAMILY
PROTEIN
(Bacteroides
fragilis) 		4 / 7 GLU A 233
ARG A 148
LEU A 164
ILE A 194
 None
 0.97A 4xumA-3nqpA:
undetectable		 4xumA-3nqpA:
20.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5MTH_B_ACTB302_0
(ANTIBODY FAB HEAVY
CHAIN
ANTIBODY FAB LIGHT
CHAIN)		 3nqp SUSD SUPERFAMILY
PROTEIN
(Bacteroides
fragilis) 		4 / 5 GLU A 143
TYR A 140
TYR A 221
TYR A 214
 None
None
EDO  A1007 (-4.3A)
None
 1.15A 5mthA-3nqpA:
0.0
5mthB-3nqpA:
0.0		 5mthA-3nqpA:
18.25
5mthB-3nqpA:
19.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5MTH_H_ACTH304_0
(ANTIBODY FAB HEAVY
CHAIN
ANTIBODY FAB LIGHT
CHAIN)		 3nqp SUSD SUPERFAMILY
PROTEIN
(Bacteroides
fragilis) 		4 / 5 GLU A 143
TYR A 140
TYR A 221
TYR A 214
 None
None
EDO  A1007 (-4.3A)
None
 1.16A 5mthH-3nqpA:
0.0
5mthL-3nqpA:
0.0		 5mthH-3nqpA:
18.25
5mthL-3nqpA:
19.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5N5D_B_SAMB303_0
(METHYLTRANSFERASE)		 3nqp SUSD SUPERFAMILY
PROTEIN
(Bacteroides
fragilis) 		5 / 12 GLU A 465
TYR A 447
ILE A 462
GLU A 451
ALA A 414
 None
 1.11A 5n5dB-3nqpA:
undetectable		 5n5dB-3nqpA:
18.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5Y9Y_A_ACTA412_0
(UNCHARACTERIZED
PROTEIN KDOO)		 3nqp SUSD SUPERFAMILY
PROTEIN
(Bacteroides
fragilis) 		3 / 3 ARG A 436
PHE A 470
ARG A 405
 None
 1.03A 5y9yA-3nqpA:
undetectable		 5y9yA-3nqpA:
22.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5YOD_H_BEZH201_0
(NS3 PROTEASE)		 3nqp SUSD SUPERFAMILY
PROTEIN
(Bacteroides
fragilis) 		4 / 5 HIS A 381
SER A 365
TYR A 378
GLY A 379
 None
None
EDO  A1005 ( 3.6A)
EDO  A1004 ( 4.8A)
 1.50A 5yodH-3nqpA:
undetectable		 5yodH-3nqpA:
17.51