SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '3ntd'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1DYR_A_TOPA407_1
(DIHYDROFOLATE
REDUCTASE)		 3ntd FAD-DEPENDENT
PYRIDINE
NUCLEOTIDE-DISULPHID
E OXIDOREDUCTASE
(Shewanella
loihica) 		5 / 11 ILE A 260
ILE A  49
PRO A  46
ILE A 146
THR A 256
 None
None
FAD  A 900 ( 4.5A)
None
None
 1.07A 1dyrA-3ntdA:
undetectable		 1dyrA-3ntdA:
16.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1E06_B_IPBB600_0
(ODORANT-BINDING
PROTEIN)		 3ntd FAD-DEPENDENT
PYRIDINE
NUCLEOTIDE-DISULPHID
E OXIDOREDUCTASE
(Shewanella
loihica) 		4 / 4 ILE A 419
MET A 426
VAL A 378
GLY A 359
 None
 1.23A 1e06B-3ntdA:
undetectable		 1e06B-3ntdA:
13.83
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ETA_1_T441128_1
(TRANSTHYRETIN)		 3ntd FAD-DEPENDENT
PYRIDINE
NUCLEOTIDE-DISULPHID
E OXIDOREDUCTASE
(Shewanella
loihica) 		4 / 5 LYS A   3
LEU A   5
GLU A  28
LEU A 109
 None
 1.17A 1eta1-3ntdA:
undetectable		 1eta1-3ntdA:
13.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ETA_2_T442129_1
(TRANSTHYRETIN)		 3ntd FAD-DEPENDENT
PYRIDINE
NUCLEOTIDE-DISULPHID
E OXIDOREDUCTASE
(Shewanella
loihica) 		4 / 5 LYS A   3
LEU A   5
GLU A  28
LEU A 109
 None
 1.19A 1eta2-3ntdA:
undetectable		 1eta2-3ntdA:
13.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ETB_1_T441128_1
(TRANSTHYRETIN)		 3ntd FAD-DEPENDENT
PYRIDINE
NUCLEOTIDE-DISULPHID
E OXIDOREDUCTASE
(Shewanella
loihica) 		4 / 6 LYS A   3
LEU A   5
GLU A  28
LEU A 109
 None
 1.18A 1etb1-3ntdA:
undetectable		 1etb1-3ntdA:
13.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ETB_2_T442129_1
(TRANSTHYRETIN)		 3ntd FAD-DEPENDENT
PYRIDINE
NUCLEOTIDE-DISULPHID
E OXIDOREDUCTASE
(Shewanella
loihica) 		4 / 6 LYS A   3
LEU A   5
GLU A  28
LEU A 109
 None
 1.17A 1etb2-3ntdA:
undetectable		 1etb2-3ntdA:
13.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1G5Y_C_9CRC502_1
(RETINOIC ACID
RECEPTOR RXR-ALPHA)		 3ntd FAD-DEPENDENT
PYRIDINE
NUCLEOTIDE-DISULPHID
E OXIDOREDUCTASE
(Shewanella
loihica) 		5 / 10 ALA A  20
LEU A 110
SER A 112
ALA A  14
ILE A  29
 None
None
FAD  A 900 (-2.9A)
COA  A 901 (-3.3A)
None
 1.27A 1g5yC-3ntdA:
undetectable		 1g5yC-3ntdA:
17.66
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2DM6_A_IMNA1401_1
(NADP-DEPENDENT
LEUKOTRIENE B4
12-HYDROXYDEHYDROGEN
ASE)		 3ntd FAD-DEPENDENT
PYRIDINE
NUCLEOTIDE-DISULPHID
E OXIDOREDUCTASE
(Shewanella
loihica) 		5 / 10 TYR A 299
ILE A 298
ALA A 297
ILE A   6
ILE A   7
 None
None
None
None
FAD  A 900 ( 4.8A)
 1.27A 2dm6A-3ntdA:
3.3
2dm6B-3ntdA:
3.7		 2dm6A-3ntdA:
23.10
2dm6B-3ntdA:
23.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2QX6_B_ML1B233_1
(RIBOSYLDIHYDRONICOTI
NAMIDE DEHYDROGENASE
[QUINONE])		 3ntd FAD-DEPENDENT
PYRIDINE
NUCLEOTIDE-DISULPHID
E OXIDOREDUCTASE
(Shewanella
loihica) 		4 / 6 GLY A 174
GLY A 206
GLN A 205
PHE A 354
 None
 0.97A 2qx6A-3ntdA:
3.1
2qx6B-3ntdA:
undetectable		 2qx6A-3ntdA:
16.93
2qx6B-3ntdA:
16.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2R2V_D_ACTD37_0
(GCN4 LEUCINE ZIPPER)		 3ntd FAD-DEPENDENT
PYRIDINE
NUCLEOTIDE-DISULPHID
E OXIDOREDUCTASE
(Shewanella
loihica) 		3 / 3 LYS A  68
ARG A  76
VAL A  75
 None
 0.94A 2r2vC-3ntdA:
undetectable
2r2vD-3ntdA:
undetectable		 2r2vC-3ntdA:
5.24
2r2vD-3ntdA:
5.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2YQZ_B_SAMB401_0
(HYPOTHETICAL PROTEIN
TTHA0223)		 3ntd FAD-DEPENDENT
PYRIDINE
NUCLEOTIDE-DISULPHID
E OXIDOREDUCTASE
(Shewanella
loihica) 		5 / 12 GLY A 160
ILE A 263
VAL A 157
LEU A 209
VAL A 207
 None
 0.96A 2yqzB-3ntdA:
undetectable		 2yqzB-3ntdA:
20.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3QOW_A_SAMA417_0
(HISTONE-LYSINE
N-METHYLTRANSFERASE)		 3ntd FAD-DEPENDENT
PYRIDINE
NUCLEOTIDE-DISULPHID
E OXIDOREDUCTASE
(Shewanella
loihica) 		5 / 12 TYR A 379
GLU A 193
VAL A 190
ALA A 460
ASP A 455
 None
 1.28A 3qowA-3ntdA:
2.1		 3qowA-3ntdA:
21.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3TQ8_A_TOPA2001_1
(DIHYDROFOLATE
REDUCTASE)		 3ntd FAD-DEPENDENT
PYRIDINE
NUCLEOTIDE-DISULPHID
E OXIDOREDUCTASE
(Shewanella
loihica) 		5 / 9 ILE A 468
ALA A 461
PHE A 401
ILE A 555
ILE A 467
 None
 1.22A 3tq8A-3ntdA:
undetectable		 3tq8A-3ntdA:
15.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ZOS_A_0LIA1004_1
(EPITHELIAL DISCOIDIN
DOMAIN-CONTAINING
RECEPTOR 1)		 3ntd FAD-DEPENDENT
PYRIDINE
NUCLEOTIDE-DISULPHID
E OXIDOREDUCTASE
(Shewanella
loihica) 		5 / 11 GLY A  12
ILE A   4
PHE A  71
VAL A 305
GLY A 328
 FAD  A 900 (-3.6A)
None
COA  A 901 ( 4.9A)
None
None
 0.98A 3zosA-3ntdA:
undetectable
3zosB-3ntdA:
undetectable		 3zosA-3ntdA:
22.18
3zosB-3ntdA:
22.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4G1B_C_ECNC403_1
(FLAVOHEMOGLOBIN)		 3ntd FAD-DEPENDENT
PYRIDINE
NUCLEOTIDE-DISULPHID
E OXIDOREDUCTASE
(Shewanella
loihica) 		5 / 9 ILE A 457
GLN A 440
LEU A 439
VAL A 378
LEU A 399
 None
 1.14A 4g1bC-3ntdA:
5.2		 4g1bC-3ntdA:
23.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4G77_A_TLFA711_0
(LACTOTRANSFERRIN)		 3ntd FAD-DEPENDENT
PYRIDINE
NUCLEOTIDE-DISULPHID
E OXIDOREDUCTASE
(Shewanella
loihica) 		4 / 7 ILE A 285
LEU A 277
ALA A 300
VAL A 301
 None
 0.67A 4g77A-3ntdA:
undetectable		 4g77A-3ntdA:
20.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4IK6_B_LURB201_1
(TRANSTHYRETIN)		 3ntd FAD-DEPENDENT
PYRIDINE
NUCLEOTIDE-DISULPHID
E OXIDOREDUCTASE
(Shewanella
loihica) 		4 / 8 LYS A   3
LEU A   5
GLU A  28
LEU A 109
 None
 0.78A 4ik6B-3ntdA:
undetectable		 4ik6B-3ntdA:
13.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4UUU_A_SAMA1546_0
(CYSTATHIONINE
BETA-SYNTHASE)		 3ntd FAD-DEPENDENT
PYRIDINE
NUCLEOTIDE-DISULPHID
E OXIDOREDUCTASE
(Shewanella
loihica) 		5 / 11 LEU A 399
ASP A 455
ALA A 461
VAL A 380
THR A 382
 None
 1.23A 4uuuA-3ntdA:
undetectable
4uuuB-3ntdA:
undetectable		 4uuuA-3ntdA:
14.51
4uuuB-3ntdA:
14.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4UUU_B_SAMB1548_0
(CYSTATHIONINE
BETA-SYNTHASE)		 3ntd FAD-DEPENDENT
PYRIDINE
NUCLEOTIDE-DISULPHID
E OXIDOREDUCTASE
(Shewanella
loihica) 		5 / 11 LEU A 399
ASP A 455
ALA A 461
VAL A 380
THR A 382
 None
 1.23A 4uuuB-3ntdA:
undetectable		 4uuuB-3ntdA:
14.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5N0X_B_SAMB501_0
(PEPTIDE
N-METHYLTRANSFERASE)		 3ntd FAD-DEPENDENT
PYRIDINE
NUCLEOTIDE-DISULPHID
E OXIDOREDUCTASE
(Shewanella
loihica) 		5 / 12 ILE A 175
GLY A 174
HIS A 172
GLN A 147
ALA A 154
 None
 1.29A 5n0xB-3ntdA:
undetectable		 5n0xB-3ntdA:
22.08
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5X7Z_A_BHAA201_0
(UNCHARACTERIZED
HTH-TYPE
TRANSCRIPTIONAL
REGULATOR RV2887)		 3ntd FAD-DEPENDENT
PYRIDINE
NUCLEOTIDE-DISULPHID
E OXIDOREDUCTASE
(Shewanella
loihica) 		4 / 6 LEU A 244
VAL A 218
LEU A 215
VAL A 125
 None
 0.88A 5x7zA-3ntdA:
undetectable		 5x7zA-3ntdA:
15.93