SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '3ocd'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1PXX_A_DIFA701_1
(PROSTAGLANDIN G/H
SYNTHASE 2)		 3ocd SOXA
(Starkeya
novella) 		5 / 10 LEU A  90
VAL A 140
ALA A 144
SER A 147
LEU A 268
 None
 1.12A 1pxxA-3ocdA:
undetectable		 1pxxA-3ocdA:
18.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1RQP_A_SAMA500_1
(5'-FLUORO-5'-DEOXYAD
ENOSINE SYNTHASE)		 3ocd SOXA
(Starkeya
novella) 		4 / 7 ASP A 148
ASN A 145
PHE A  50
SER A 272
 None
 1.05A 1rqpB-3ocdA:
undetectable		 1rqpB-3ocdA:
22.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1RQP_C_SAMC500_0
(5'-FLUORO-5'-DEOXYAD
ENOSINE SYNTHASE)		 3ocd SOXA
(Starkeya
novella) 		4 / 8 ASP A 148
ASN A 145
PHE A  50
SER A 272
 None
 1.05A 1rqpA-3ocdA:
undetectable		 1rqpA-3ocdA:
22.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2BM9_F_SAMF301_0
(CEPHALOSPORIN
HYDROXYLASE CMCI)		 3ocd SOXX
(Starkeya
novella) 		5 / 12 GLY B 139
GLY B 123
ASN B 124
ALA B 105
ALA B 102
 None
HEC  B 401 (-3.6A)
None
None
None
 1.07A 2bm9F-3ocdB:
undetectable		 2bm9F-3ocdB:
21.83
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2BR4_A_SAMA301_1
(CEPHALOSPORIN
HYDROXYLASE CMCI)		 3ocd SOXA
(Starkeya
novella) 		3 / 3 LYS A 274
ASP A 208
ASP A 203
 HEC  A 401 (-3.4A)
None
None
 1.11A 2br4A-3ocdA:
undetectable		 2br4A-3ocdA:
24.68
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2V7U_A_SAMA1299_0
(5'-FLUORO-5'-DEOXY
ADENOSINE SYNTHETASE)		 3ocd SOXA
(Starkeya
novella) 		4 / 8 ASP A 148
ASN A 145
PHE A  50
SER A 272
 None
 1.06A 2v7uA-3ocdA:
undetectable		 2v7uA-3ocdA:
23.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2V7U_B_SAMB1299_1
(5'-FLUORO-5'-DEOXY
ADENOSINE SYNTHETASE)		 3ocd SOXA
(Starkeya
novella) 		4 / 7 ASP A 148
ASN A 145
PHE A  50
SER A 272
 None
 1.06A 2v7uB-3ocdA:
undetectable		 2v7uB-3ocdA:
23.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4COX_C_IMNC701_1
(CYCLOOXYGENASE-2)		 3ocd SOXA
(Starkeya
novella) 		5 / 12 LEU A  90
VAL A 140
ALA A 144
SER A 147
LEU A 268
 None
 1.04A 4coxC-3ocdA:
undetectable		 4coxC-3ocdA:
19.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4FP9_D_SAMD401_1
(METHYLTRANSFERASE
NSUN4)		 3ocd SOXA
SOXX
(Starkeya
novella;
Starkeya
novella) 		3 / 3 ASP B 168
ARG B  86
ASP A 180
 None
 0.87A 4fp9D-3ocdB:
undetectable		 4fp9D-3ocdB:
19.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5C0O_H_SAMH301_0
(TRNA
(ADENINE(58)-N(1))-M
ETHYLTRANSFERASE
TRMI)		 3ocd SOXA
(Starkeya
novella) 		5 / 12 GLY A  85
GLY A  77
LYS A 151
LEU A 268
GLU A 267
 None
 0.99A 5c0oH-3ocdA:
undetectable		 5c0oH-3ocdA:
23.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5KIR_A_RCXA601_1
(PROSTAGLANDIN G/H
SYNTHASE 2)		 3ocd SOXA
(Starkeya
novella) 		5 / 12 LEU A  90
VAL A 140
ALA A 144
SER A 147
LEU A 268
 None
 0.94A 5kirA-3ocdA:
undetectable		 5kirA-3ocdA:
19.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5MUG_A_VIVA301_1
(ALPHA-TOCOPHEROL
TRANSFER PROTEIN)		 3ocd SOXA
(Starkeya
novella) 		3 / 3 SER A  61
SER A  70
PHE A 142
 None
 0.93A 5mugA-3ocdA:
undetectable		 5mugA-3ocdA:
21.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5O4Y_F_CCSF14_0
(PHE-MAA-ASN-PRO-HIS-
LEU-SER-TRP-SER-TRP-
9KK-9KK-ARG-CCS-GLY-
NH2)		 3ocd SOXA
SOXX
(Starkeya
novella;
Starkeya
novella) 		4 / 6 PHE A 173
LEU A 171
SER B  65
ARG A 175
 None
 1.08A 5o4yF-3ocdA:
undetectable		 5o4yF-3ocdA:
5.91
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6A7P_B_9SCB601_0
(SERUM ALBUMIN)		 3ocd SOXX
(Starkeya
novella) 		5 / 12 VAL B 195
LEU B 199
ALA B 174
PHE B 181
LEU B 187
 HEC  B 401 ( 4.6A)
None
None
HEC  B 401 (-3.8A)
None
 1.22A 6a7pB-3ocdB:
undetectable		 6a7pB-3ocdB:
16.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6A7P_B_9SCB601_0
(SERUM ALBUMIN)		 3ocd SOXX
(Starkeya
novella) 		5 / 12 VAL B 195
LEU B 199
ARG B 180
PHE B 181
LEU B 187
 HEC  B 401 ( 4.6A)
None
None
HEC  B 401 (-3.8A)
None
 1.18A 6a7pB-3ocdB:
undetectable		 6a7pB-3ocdB:
16.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6CI6_A_NBOA607_1
(SERUM ALBUMIN)		 3ocd SOXA
(Starkeya
novella) 		5 / 7 ASP A 138
ASN A  52
ALA A 141
GLU A  57
LEU A  51
 None
 1.24A 6ci6A-3ocdA:
undetectable		 6ci6A-3ocdA:
18.09