SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '3pdd'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1Z9H_D_IMND476_1
(MEMBRANE-ASSOCIATED
PROSTAGLANDIN E
SYNTHASE-2)		 3pdd GLYCOSIDE HYDROLASE,
FAMILY 9
(Ruminiclostridiu
m
thermocellum) 		5 / 12 THR A  82
ILE A  19
SER A   6
ILE A   4
VAL A  84
 None
 1.02A 1z9hD-3pddA:
undetectable		 1z9hD-3pddA:
21.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2BR4_D_SAMD301_1
(CEPHALOSPORIN
HYDROXYLASE CMCI)		 3pdd GLYCOSIDE HYDROLASE,
FAMILY 9
(Ruminiclostridiu
m
thermocellum) 		3 / 3 LYS A  87
ASP A 128
ASP A 165
 None
 0.94A 2br4D-3pddA:
undetectable		 2br4D-3pddA:
21.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4MDA_A_RLTA403_1
(MARINER MOS1
TRANSPOSASE)		 3pdd GLYCOSIDE HYDROLASE,
FAMILY 9
(Ruminiclostridiu
m
thermocellum) 		4 / 6 ASP A 119
ALA A 161
TYR A 162
ASP A 164
 CA  A 193 (-2.1A)
None
None
None
 1.10A 4mdaA-3pddA:
undetectable		 4mdaA-3pddA:
20.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4MDB_A_RLTA401_1
(MARINER MOS1
TRANSPOSASE)		 3pdd GLYCOSIDE HYDROLASE,
FAMILY 9
(Ruminiclostridiu
m
thermocellum) 		4 / 6 ASP A 119
ALA A 161
TYR A 162
ASP A 164
 CA  A 193 (-2.1A)
None
None
None
 1.13A 4mdbA-3pddA:
undetectable		 4mdbA-3pddA:
20.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4O2B_B_LOCB503_1
(TUBULIN ALPHA-1B
CHAIN
TUBULIN BETA-2B
CHAIN)		 3pdd GLYCOSIDE HYDROLASE,
FAMILY 9
(Ruminiclostridiu
m
thermocellum) 		3 / 3 SER A  32
ALA A  69
VAL A  68
 None
 0.60A 4o2bA-3pddA:
undetectable		 4o2bA-3pddA:
18.04
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4Q1W_A_017A104_2
(ASPARTYL PROTEASE)		 3pdd GLYCOSIDE HYDROLASE,
FAMILY 9
(Ruminiclostridiu
m
thermocellum) 		5 / 10 ALA A 167
ASP A 166
GLY A 122
VAL A  88
ILE A  89
 None
None
CA  A 193 ( 4.6A)
None
None
 1.09A 4q1wB-3pddA:
undetectable		 4q1wB-3pddA:
18.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ZDY_A_1YNA602_2
(LANOSTEROL 14-ALPHA
DEMETHYLASE)		 3pdd GLYCOSIDE HYDROLASE,
FAMILY 9
(Ruminiclostridiu
m
thermocellum) 		3 / 3 ALA A 115
TYR A 144
PRO A  92
 None
 0.70A 4zdyA-3pddA:
undetectable		 4zdyA-3pddA:
16.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5B6I_A_ADNA302_1
(FLUORINASE)		 3pdd GLYCOSIDE HYDROLASE,
FAMILY 9
(Ruminiclostridiu
m
thermocellum) 		4 / 7 THR A  52
TYR A  51
PRO A  50
THR A  48
 CA  A 192 ( 4.9A)
None
CA  A 192 (-4.7A)
CA  A 192 (-3.8A)
 1.32A 5b6iA-3pddA:
undetectable		 5b6iA-3pddA:
21.85