SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '3pmk'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ERR_B_RALB600_2
(ESTROGEN RECEPTOR)		 3pmk NUCLEOCAPSID PROTEIN
(Recombinant
vesicular
stomatitis
Indiana
virus
rVSV-G/GFP) 		4 / 6 ASP A  23
MET A 261
LEU A 228
HIS A 298
 None
 1.18A 1errB-3pmkA:
undetectable		 1errB-3pmkA:
21.76
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1KIA_B_SAMB1293_1
(GLYCINE
N-METHYLTRANSFERASE)		 3pmk NUCLEOCAPSID PROTEIN
(Recombinant
vesicular
stomatitis
Indiana
virus
rVSV-G/GFP) 		4 / 5 ARG A 309
ASP A 392
ASN A 367
SER A 340
 None
 1.26A 1kiaB-3pmkA:
undetectable		 1kiaB-3pmkA:
23.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1KIA_C_SAMC2293_1
(GLYCINE
N-METHYLTRANSFERASE)		 3pmk NUCLEOCAPSID PROTEIN
(Recombinant
vesicular
stomatitis
Indiana
virus
rVSV-G/GFP) 		4 / 6 ARG A 309
ASP A 392
ASN A 367
SER A 340
 None
 1.25A 1kiaC-3pmkA:
undetectable		 1kiaC-3pmkA:
23.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1NBH_B_SAMB1293_1
(GLYCINE
N-METHYLTRANSFERASE)		 3pmk NUCLEOCAPSID PROTEIN
(Recombinant
vesicular
stomatitis
Indiana
virus
rVSV-G/GFP) 		4 / 5 ARG A 309
ASP A 392
ASN A 367
SER A 340
 None
 1.32A 1nbhB-3pmkA:
0.0		 1nbhB-3pmkA:
23.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1QHY_A_CLMA888_0
(CHLORAMPHENICOL
PHOSPHOTRANSFERASE)		 3pmk NUCLEOCAPSID PROTEIN
(Recombinant
vesicular
stomatitis
Indiana
virus
rVSV-G/GFP) 		4 / 6 PRO A 389
MET A 394
ALA A 397
GLU A 419
 None
 1.20A 1qhyA-3pmkA:
undetectable		 1qhyA-3pmkA:
19.50
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1S9P_B_DESB459_2
(ESTROGEN-RELATED
RECEPTOR GAMMA)		 3pmk NUCLEOCAPSID PROTEIN
(Recombinant
vesicular
stomatitis
Indiana
virus
rVSV-G/GFP) 		3 / 3 LEU A 306
HIS A 233
ILE A 237
 None
 0.54A 1s9pB-3pmkA:
undetectable		 1s9pB-3pmkA:
20.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1XVA_A_ACTA294_0
(GLYCINE
N-METHYLTRANSFERASE)		 3pmk NUCLEOCAPSID PROTEIN
(Recombinant
vesicular
stomatitis
Indiana
virus
rVSV-G/GFP) 		4 / 5 TRP A 300
ILE A 249
LEU A 327
ALA A 296
 None
 1.31A 1xvaA-3pmkA:
undetectable
1xvaB-3pmkA:
undetectable		 1xvaA-3pmkA:
23.84
1xvaB-3pmkA:
23.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2A1H_A_GBNA502_1
(BRANCHED CHAIN
AMINOTRANSFERASE)		 3pmk NUCLEOCAPSID PROTEIN
(Recombinant
vesicular
stomatitis
Indiana
virus
rVSV-G/GFP) 		4 / 8 THR A 238
GLY A 339
ALA A 337
VAL A 245
 None
 0.69A 2a1hA-3pmkA:
undetectable
2a1hB-3pmkA:
undetectable		 2a1hA-3pmkA:
21.09
2a1hB-3pmkA:
21.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2A1H_B_GBNB501_1
(BRANCHED CHAIN
AMINOTRANSFERASE)		 3pmk NUCLEOCAPSID PROTEIN
(Recombinant
vesicular
stomatitis
Indiana
virus
rVSV-G/GFP) 		4 / 8 VAL A 245
THR A 238
GLY A 339
ALA A 337
 None
 0.63A 2a1hA-3pmkA:
undetectable
2a1hB-3pmkA:
undetectable		 2a1hA-3pmkA:
21.09
2a1hB-3pmkA:
21.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ADM_A_SAMA500_0
(ADENINE-N6-DNA-METHY
LTRANSFERASE TAQI)		 3pmk NUCLEOCAPSID PROTEIN
(Recombinant
vesicular
stomatitis
Indiana
virus
rVSV-G/GFP) 		5 / 11 THR A 230
ALA A 296
ASP A 256
ALA A 255
PRO A 295
 None
 1.34A 2admA-3pmkA:
undetectable		 2admA-3pmkA:
21.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2HRC_A_CHDA703_0
(FERROCHELATASE)		 3pmk NUCLEOCAPSID PROTEIN
(Recombinant
vesicular
stomatitis
Indiana
virus
rVSV-G/GFP) 		4 / 4 LEU A 136
PRO A 135
LEU A 139
ARG A 214
 None
 1.34A 2hrcA-3pmkA:
undetectable		 2hrcA-3pmkA:
20.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2JFA_A_RALA600_2
(ESTROGEN RECEPTOR)		 3pmk NUCLEOCAPSID PROTEIN
(Recombinant
vesicular
stomatitis
Indiana
virus
rVSV-G/GFP) 		4 / 5 ASP A  23
MET A 261
LEU A 228
HIS A 298
 None
 1.16A 2jfaA-3pmkA:
undetectable		 2jfaA-3pmkA:
19.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2QXS_A_RALA600_2
(ESTROGEN RECEPTOR)		 3pmk NUCLEOCAPSID PROTEIN
(Recombinant
vesicular
stomatitis
Indiana
virus
rVSV-G/GFP) 		4 / 5 ASP A  23
MET A 261
LEU A 228
HIS A 298
 None
 1.12A 2qxsA-3pmkA:
undetectable		 2qxsA-3pmkA:
21.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2QXS_B_RALB600_2
(ESTROGEN RECEPTOR)		 3pmk NUCLEOCAPSID PROTEIN
(Recombinant
vesicular
stomatitis
Indiana
virus
rVSV-G/GFP) 		4 / 5 ASP A  23
MET A 261
LEU A 228
HIS A 298
 None
 1.12A 2qxsB-3pmkA:
undetectable		 2qxsB-3pmkA:
21.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3DL9_A_V2HA602_1
(CYTOCHROME P450 2R1)		 3pmk NUCLEOCAPSID PROTEIN
(Recombinant
vesicular
stomatitis
Indiana
virus
rVSV-G/GFP) 		4 / 5 ALA A 397
LEU A 404
GLY A 413
THR A 230
 None
 0.84A 3dl9A-3pmkA:
undetectable		 3dl9A-3pmkA:
20.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3GWU_A_SREA801_1
(TRANSPORTER)		 3pmk NUCLEOCAPSID PROTEIN
(Recombinant
vesicular
stomatitis
Indiana
virus
rVSV-G/GFP) 		5 / 12 LEU A  73
LEU A  77
PHE A 105
LEU A  40
THR A  45
 None
 1.27A 3gwuA-3pmkA:
undetectable		 3gwuA-3pmkA:
22.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3HCO_A_CHDA3_0
(FERROCHELATASE,
MITOCHONDRIAL)		 3pmk NUCLEOCAPSID PROTEIN
(Recombinant
vesicular
stomatitis
Indiana
virus
rVSV-G/GFP) 		4 / 4 LEU A 283
PRO A  28
LEU A 278
ARG A 221
 None
 1.24A 3hcoA-3pmkA:
undetectable		 3hcoA-3pmkA:
21.05
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3KP6_B_SALB3003_1
(TRANSCRIPTIONAL
REGULATOR TCAR)		 3pmk NUCLEOCAPSID PROTEIN
(Recombinant
vesicular
stomatitis
Indiana
virus
rVSV-G/GFP) 		4 / 6 ILE A  66
VAL A  69
LEU A 138
LEU A 141
 None
 0.92A 3kp6A-3pmkA:
undetectable
3kp6B-3pmkA:
undetectable		 3kp6A-3pmkA:
18.64
3kp6B-3pmkA:
18.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3OU6_B_SAMB300_1
(SAM-DEPENDENT
METHYLTRANSFERASE)		 3pmk NUCLEOCAPSID PROTEIN
(Recombinant
vesicular
stomatitis
Indiana
virus
rVSV-G/GFP) 		3 / 3 TYR A 191
ASP A 280
ASP A 224
 None
 0.89A 3ou6B-3pmkA:
undetectable		 3ou6B-3pmkA:
19.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3OZV_B_ECNB411_1
(FLAVOHEMOGLOBIN)		 3pmk NUCLEOCAPSID PROTEIN
(Recombinant
vesicular
stomatitis
Indiana
virus
rVSV-G/GFP) 		5 / 9 ILE A 412
GLN A 302
ALA A 305
LEU A 306
LEU A 407
 None
 0.98A 3ozvB-3pmkA:
undetectable		 3ozvB-3pmkA:
23.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4HTF_A_ACTA303_0
(S-ADENOSYLMETHIONINE
-DEPENDENT
METHYLTRANSFERASE)		 3pmk NUCLEOCAPSID PROTEIN
(Recombinant
vesicular
stomatitis
Indiana
virus
rVSV-G/GFP) 		3 / 3 TYR A 277
HIS A 203
ARG A 221
 None
 1.17A 4htfA-3pmkA:
undetectable		 4htfA-3pmkA:
22.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4QYQ_A_3CJA607_1
(LACTOPEROXIDASE)		 3pmk NUCLEOCAPSID PROTEIN
(Recombinant
vesicular
stomatitis
Indiana
virus
rVSV-G/GFP) 		3 / 3 GLN A 302
HIS A 298
ARG A 317
 None
 0.77A 4qyqA-3pmkA:
undetectable		 4qyqA-3pmkA:
21.78
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4QYQ_B_3CJB607_1
(LACTOPEROXIDASE)		 3pmk NUCLEOCAPSID PROTEIN
(Recombinant
vesicular
stomatitis
Indiana
virus
rVSV-G/GFP) 		3 / 3 GLN A 302
HIS A 298
ARG A 317
 None
 0.74A 4qyqB-3pmkA:
undetectable		 4qyqB-3pmkA:
21.78
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4WG0_C_CHDC102_0
(NUCLEAR RECEPTOR
COACTIVATOR 2)		 3pmk NUCLEOCAPSID PROTEIN
(Recombinant
vesicular
stomatitis
Indiana
virus
rVSV-G/GFP) 		4 / 7 LEU A 139
ASN A  70
LEU A  73
LEU A  77
 None
 0.63A 4wg0B-3pmkA:
undetectable
4wg0C-3pmkA:
undetectable		 4wg0B-3pmkA:
15.71
4wg0C-3pmkA:
15.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4WG0_L_CHDL103_0
(NUCLEAR RECEPTOR
COACTIVATOR 2)		 3pmk NUCLEOCAPSID PROTEIN
(Recombinant
vesicular
stomatitis
Indiana
virus
rVSV-G/GFP) 		4 / 7 ASN A  70
LEU A  73
LEU A  77
LEU A 139
 None
 0.67A 4wg0L-3pmkA:
undetectable
4wg0M-3pmkA:
undetectable		 4wg0L-3pmkA:
15.71
4wg0M-3pmkA:
15.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5CZY_A_SAMA603_0
(LEGIONELLA EFFECTOR
LEGAS4)		 3pmk NUCLEOCAPSID PROTEIN
(Recombinant
vesicular
stomatitis
Indiana
virus
rVSV-G/GFP) 		5 / 12 LEU A  59
GLY A  58
TYR A  54
TYR A 137
LEU A 138
 None
 1.04A 5czyA-3pmkA:
undetectable		 5czyA-3pmkA:
21.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5E2I_A_DMEA605_1
(ACETYLCHOLINESTERASE)		 3pmk NUCLEOCAPSID PROTEIN
(Recombinant
vesicular
stomatitis
Indiana
virus
rVSV-G/GFP) 		4 / 6 ASP A 199
TYR A 142
PHE A 281
TYR A 277
 None
 1.30A 5e2iA-3pmkA:
1.1		 5e2iA-3pmkA:
20.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5OV9_B_CVIB602_0
(ACETYLCHOLINESTERASE)		 3pmk NUCLEOCAPSID PROTEIN
(Recombinant
vesicular
stomatitis
Indiana
virus
rVSV-G/GFP) 		4 / 8 ASP A 131
THR A 127
VAL A  55
TYR A  72
 None
 1.24A 5ov9B-3pmkA:
undetectable		 5ov9B-3pmkA:
20.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6A7P_B_9SCB601_1
(SERUM ALBUMIN)		 3pmk NUCLEOCAPSID PROTEIN
(Recombinant
vesicular
stomatitis
Indiana
virus
rVSV-G/GFP) 		4 / 6 ASN A 294
TYR A  27
LEU A 228
SER A 287
 None
 1.39A 6a7pB-3pmkA:
undetectable		 6a7pB-3pmkA:
20.30