SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '3rkd'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1JGL_L_ESTL911_1
(IG GAMMA-1-CHAIN
IG KAPPA-CHAIN)
3rkd MONOCLONAL ANTIBODY,
LIGHT CHAIN

(Mus
musculus)
5 / 10 ALA L  34
TYR L  36
LEU L  46
TYR L  49
TRP L  96
None
0.68A 1jglH-3rkdL:
17.2
1jglL-3rkdL:
28.3
1jglH-3rkdL:
31.91
1jglL-3rkdL:
92.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1MRQ_A_STRA501_1
(ALDO-KETO REDUCTASE
FAMILY 1 MEMBER C1)
3rkd MONOCLONAL ANTIBODY,
LIGHT CHAIN

(Mus
musculus)
5 / 11 LEU L 104
GLU L  17
VAL L  13
LEU L  47
LEU L  73
None
1.34A 1mrqA-3rkdL:
undetectable
1mrqA-3rkdL:
21.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1MX1_D_THAD4_1
(LIVER
CARBOXYLESTERASE I)
3rkd MONOCLONAL ANTIBODY,
LIGHT CHAIN

(Mus
musculus)
5 / 12 LEU L  47
VAL L  13
LEU L  78
ILE L  21
LEU L  73
None
0.97A 1mx1D-3rkdL:
undetectable
1mx1D-3rkdL:
16.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2CEO_A_T44A1395_1
(THYROXINE-BINDING
GLOBULIN)
3rkd CAPSID PROTEIN
(Orthohepevirus
A)
5 / 11 LEU A 471
LEU A 539
LEU A 521
LEU A 601
ARG A 466
None
1.09A 2ceoA-3rkdA:
undetectable
2ceoA-3rkdA:
16.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2HRE_B_CHDB701_0
(FERROCHELATASE)
3rkd CAPSID PROTEIN
(Orthohepevirus
A)
3 / 3 LYS A 554
GLY A 591
PRO A 592
None
0.84A 2hreB-3rkdA:
undetectable
2hreB-3rkdA:
17.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2QB4_A_DSMA801_1
(TRANSPORTER)
3rkd CAPSID PROTEIN
(Orthohepevirus
A)
5 / 12 ARG A 460
ALA A 507
PHE A 462
LEU A 471
ASP A 469
None
0.94A 2qb4A-3rkdA:
undetectable
2qb4A-3rkdA:
15.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2QJU_A_DSMA801_1
(TRANSPORTER)
3rkd CAPSID PROTEIN
(Orthohepevirus
A)
5 / 11 ARG A 460
ALA A 507
PHE A 462
LEU A 471
ASP A 469
None
0.93A 2qjuA-3rkdA:
undetectable
2qjuA-3rkdA:
15.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4IKL_B_SUZB201_1
(TRANSTHYRETIN)
3rkd CAPSID PROTEIN
(Orthohepevirus
A)
4 / 8 SER A 594
SER A 596
SER A 474
THR A 476
None
0.97A 4iklA-3rkdA:
undetectable
4iklB-3rkdA:
undetectable
4iklA-3rkdA:
23.42
4iklB-3rkdA:
23.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4JTR_A_IBPA401_1
(ALDO-KETO REDUCTASE
FAMILY 1 MEMBER C2)
3rkd CAPSID PROTEIN
(Orthohepevirus
A)
4 / 8 VAL A 571
TRP A 516
LEU A 601
LEU A 465
None
0.98A 4jtrA-3rkdA:
undetectable
4jtrA-3rkdA:
18.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4TVT_A_ASCA301_0
(THAUMATIN-1)
3rkd MONOCLONAL ANTIBODY,
LIGHT CHAIN

(Mus
musculus)
3 / 3 THR L  18
ASN L  76
SER L  77
None
0.48A 4tvtA-3rkdL:
undetectable
4tvtA-3rkdL:
23.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4X1I_B_LOCB502_1
(TUBULIN ALPHA CHAIN
TUBULIN BETA CHAIN)
3rkd CAPSID PROTEIN
(Orthohepevirus
A)
3 / 3 SER A 582
ALA A 580
VAL A 579
None
0.61A 4x1iA-3rkdA:
undetectable
4x1iA-3rkdA:
19.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4YHA_B_MZMB303_1
(ALPHA-CARBONIC
ANHYDRASE)
3rkd CAPSID PROTEIN
(Orthohepevirus
A)
5 / 10 HIS A 577
VAL A 579
VAL A 571
LEU A 500
ALA A 509
None
1.40A 4yhaB-3rkdA:
undetectable
4yhaB-3rkdA:
21.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5EYP_B_LOCB502_1
(TUBULIN ALPHA CHAIN
TUBULIN BETA CHAIN)
3rkd CAPSID PROTEIN
(Orthohepevirus
A)
3 / 3 SER A 582
ALA A 580
VAL A 579
None
0.58A 5eypA-3rkdA:
undetectable
5eypA-3rkdA:
20.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6DRY_A_H8DA2001_0
(5HT2B RECEPTOR, BRIL
CHIMERA)
3rkd CAPSID PROTEIN
(Orthohepevirus
A)
5 / 11 VAL A 579
SER A 495
VAL A 501
LEU A 500
GLN A 508
None
1.26A 6dryA-3rkdA:
undetectable
6dryA-3rkdA:
14.53