SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '3u1d'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)

Filter list by:

	DrReposER ID / Desc.	Hit PDBID	Hit Macromolecule	Res. Matches	Interface	HETATM	RMSD	Dali Z-score	Seq. Identity (%)
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	1KT3_A_RTLA184_0 (PLASMA RETINOL-BINDING PROTEIN)	3u1d	UNCHARACTERIZED PROTEIN (Halomicrobium mukohataei)	4 / 7	LEU A 29 MET A 121 TYR A 118 LEU A 36	None None None PEG A 152 (-4.8A)	1.01A	1kt3A-3u1dA: undetectable	1kt3A-3u1dA: 22.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	3W68_A_VIVA301_0 (ALPHA-TOCOPHEROL TRANSFER PROTEIN)	3u1d	UNCHARACTERIZED PROTEIN (Halomicrobium mukohataei)	5 / 12	LEU A 60 PHE A 22 VAL A 31 LEU A 32 VAL A 73	None	1.13A	3w68A-3u1dA: undetectable	3w68A-3u1dA: 19.78
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	4A97_A_ZPCA1318_1 (CYS-LOOP LIGAND-GATED ION CHANNEL)	3u1d	UNCHARACTERIZED PROTEIN (Halomicrobium mukohataei)	4 / 7	GLU A 46 ILE A 130 GLU A 47 VAL A 68	None	1.10A	4a97A-3u1dA: undetectable	4a97A-3u1dA: 20.27
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	5I1O_F_DVAF9_0 (D-VILLIN HEADPIECE SUBDOMAIN VILLIN-1)	3u1d	UNCHARACTERIZED PROTEIN (Halomicrobium mukohataei)	3 / 3	ALA A 129 ASN A 132 LEU A 133	None	0.37A	5i1oC-3u1dA: undetectable	5i1oC-3u1dA: 14.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	5I1P_G_DVAG9_0 (D-VILLIN HEADPIECE SUBDOMAIN VILLIN-1)	3u1d	UNCHARACTERIZED PROTEIN (Halomicrobium mukohataei)	3 / 3	ALA A 129 ASN A 132 LEU A 133	None	0.40A	5i1pD-3u1dA: undetectable	5i1pD-3u1dA: 14.15

[["DrReposER ID","Desc.","Hit PDB","Hit molecule","Hit organism","Res. no.","Interface","HETATM","RMSD","Z-score","Seq ID"],["1KT3_A_RTLA184_0","PLASMA RETINOL-BINDING PROTEIN","3u1d","UNCHARACTERIZED PROTEIN","Halomicrobium mukohataei",4,"LEU A  29;MET A 121;TYR A 118;LEU A  36","None;None;None;PEG A 152 (-4.8A)","1.01A","1kt3A-3u1dA:undetectable","1kt3A-3u1dA:22.51"],["3W68_A_VIVA301_0","ALPHA-TOCOPHEROL TRANSFER PROTEIN","3u1d","UNCHARACTERIZED PROTEIN","Halomicrobium mukohataei",5,"LEU A  60;PHE A  22;VAL A  31;LEU A  32;VAL A  73","None","1.13A","3w68A-3u1dA:undetectable","3w68A-3u1dA:19.78"],["4A97_A_ZPCA1318_1","CYS-LOOP LIGAND-GATED ION CHANNEL","3u1d","UNCHARACTERIZED PROTEIN","Halomicrobium mukohataei",4,"GLU A  46;ILE A 130;GLU A  47;VAL A  68","None","1.10A","4a97A-3u1dA:undetectable","4a97A-3u1dA:20.27"],["5I1O_F_DVAF9_0","D-VILLIN HEADPIECE SUBDOMAIN;VILLIN-1","3u1d","UNCHARACTERIZED PROTEIN","Halomicrobium mukohataei",3,"ALA A 129;ASN A 132;LEU A 133","None","0.37A","5i1oC-3u1dA:undetectable","5i1oC-3u1dA:14.15"],["5I1P_G_DVAG9_0","D-VILLIN HEADPIECE SUBDOMAIN;VILLIN-1","3u1d","UNCHARACTERIZED PROTEIN","Halomicrobium mukohataei",3,"ALA A 129;ASN A 132;LEU A 133","None","0.40A","5i1pD-3u1dA:undetectable","5i1pD-3u1dA:14.15"]]