SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '3u2k'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1AJ6_A_NOVA1_1
(GYRASE)
3u2k DNA GYRASE SUBUNIT B
(Staphylococcus
aureus)
9 / 9 ASN A  54
GLU A  58
ASP A  81
ARG A  84
ILE A  86
PRO A  87
ALA A  98
ILE A 102
THR A 173
087  A   1 (-3.9A)
087  A   1 (-3.4A)
087  A   1 (-3.5A)
087  A   1 (-3.8A)
087  A   1 (-4.4A)
087  A   1 (-4.3A)
None
None
087  A   1 ( 3.8A)
0.49A 1aj6A-3u2kA:
28.1
1aj6A-3u2kA:
48.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1KIJ_A_NOVA400_1
(DNA GYRASE SUBUNIT B)
3u2k DNA GYRASE SUBUNIT B
(Staphylococcus
aureus)
10 / 12 ASP A  57
GLU A  58
ASP A  81
ARG A  84
ILE A  86
PRO A  87
ASP A  89
ILE A 102
ARG A 144
THR A 173
MG  A 234 ( 4.8A)
087  A   1 (-3.4A)
087  A   1 (-3.5A)
087  A   1 (-3.8A)
087  A   1 (-4.4A)
087  A   1 (-4.3A)
None
None
087  A   1 (-2.5A)
087  A   1 ( 3.8A)
0.60A 1kijA-3u2kA:
26.9
1kijA-3u2kA:
27.44
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1KIJ_B_NOVB444_1
(DNA GYRASE SUBUNIT B)
3u2k DNA GYRASE SUBUNIT B
(Staphylococcus
aureus)
10 / 12 ASN A  54
GLU A  58
ASP A  81
ARG A  84
ILE A  86
PRO A  87
ASP A  89
ILE A 102
ARG A 144
THR A 173
087  A   1 (-3.9A)
087  A   1 (-3.4A)
087  A   1 (-3.5A)
087  A   1 (-3.8A)
087  A   1 (-4.4A)
087  A   1 (-4.3A)
None
None
087  A   1 (-2.5A)
087  A   1 ( 3.8A)
0.61A 1kijB-3u2kA:
27.2
1kijB-3u2kA:
27.44
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1S14_A_NOVA1300_1
(TOPOISOMERASE IV
SUBUNIT B)
3u2k DNA GYRASE SUBUNIT B
(Staphylococcus
aureus)
11 / 12 ASN A  54
SER A  55
ASP A  57
GLU A  58
ASP A  81
ARG A  84
PRO A  87
ASP A  89
ILE A 102
ARG A 144
THR A 173
087  A   1 (-3.9A)
087  A   1 (-3.3A)
MG  A 234 ( 4.8A)
087  A   1 (-3.4A)
087  A   1 (-3.5A)
087  A   1 (-3.8A)
087  A   1 (-4.3A)
None
None
087  A   1 (-2.5A)
087  A   1 ( 3.8A)
0.53A 1s14A-3u2kA:
25.5
1s14A-3u2kA:
43.28
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1S14_B_NOVB2300_1
(TOPOISOMERASE IV
SUBUNIT B)
3u2k DNA GYRASE SUBUNIT B
(Staphylococcus
aureus)
11 / 12 ASN A  54
SER A  55
ASP A  57
GLU A  58
ASP A  81
ARG A  84
PRO A  87
ASP A  89
ALA A  98
ILE A 102
ARG A 144
087  A   1 (-3.9A)
087  A   1 (-3.3A)
MG  A 234 ( 4.8A)
087  A   1 (-3.4A)
087  A   1 (-3.5A)
087  A   1 (-3.8A)
087  A   1 (-4.3A)
None
None
None
087  A   1 (-2.5A)
0.56A 1s14B-3u2kA:
27.7
1s14B-3u2kA:
43.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1VIF_A_FOLA1_0
(DIHYDROFOLATE
REDUCTASE)
3u2k DNA GYRASE SUBUNIT B
(Staphylococcus
aureus)
3 / 3 GLN A 196
ILE A 199
TYR A 227
None
0.72A 1vifA-3u2kA:
undetectable
1vifA-3u2kA:
15.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ZT7_A_GLYA1300_0
(GLYCYL-TRNA
SYNTHETASE)
3u2k DNA GYRASE SUBUNIT B
(Staphylococcus
aureus)
4 / 7 GLU A  68
ARG A 214
GLU A 224
SER A 226
None
1.18A 2zt7A-3u2kA:
undetectable
2zt7A-3u2kA:
16.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ZZN_B_SAMB402_0
(UNCHARACTERIZED
PROTEIN MJ0883)
3u2k DNA GYRASE SUBUNIT B
(Staphylococcus
aureus)
5 / 12 TYR A  63
ARG A 144
GLY A  83
ILE A 209
ASN A  65
None
087  A   1 (-2.5A)
None
None
MG  A   2 ( 4.7A)
1.09A 2zznB-3u2kA:
undetectable
2zznB-3u2kA:
20.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3LPS_A_NOVA901_1
(TOPOISOMERASE IV
SUBUNIT B)
3u2k DNA GYRASE SUBUNIT B
(Staphylococcus
aureus)
11 / 12 ASN A  54
SER A  55
ASP A  57
GLU A  58
ASP A  81
ARG A  84
PRO A  87
ASP A  89
ILE A 102
ARG A 144
THR A 173
087  A   1 (-3.9A)
087  A   1 (-3.3A)
MG  A 234 ( 4.8A)
087  A   1 (-3.4A)
087  A   1 (-3.5A)
087  A   1 (-3.8A)
087  A   1 (-4.3A)
None
None
087  A   1 (-2.5A)
087  A   1 ( 3.8A)
0.57A 3lpsA-3u2kA:
26.4
3lpsA-3u2kA:
26.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4LNW_A_T3A501_2
(THYROID HORMONE
RECEPTOR ALPHA)
3u2k DNA GYRASE SUBUNIT B
(Staphylococcus
aureus)
3 / 3 ILE A 102
MET A  94
ARG A  96
None
0.91A 4lnwA-3u2kA:
undetectable
4lnwA-3u2kA:
21.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4LNX_A_T3A502_2
(THYROID HORMONE
RECEPTOR ALPHA)
3u2k DNA GYRASE SUBUNIT B
(Staphylococcus
aureus)
3 / 3 ILE A 102
MET A  94
ARG A  96
None
0.88A 4lnxA-3u2kA:
undetectable
4lnxA-3u2kA:
21.90
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URN_A_NOVA2000_1
(DNA TOPOISOMERASE
IV, B SUBUNIT)
3u2k DNA GYRASE SUBUNIT B
(Staphylococcus
aureus)
9 / 11 ASN A  54
SER A  55
ASP A  57
GLU A  58
ASP A  81
ARG A  84
PRO A  87
ARG A 144
THR A 173
087  A   1 (-3.9A)
087  A   1 (-3.3A)
MG  A 234 ( 4.8A)
087  A   1 (-3.4A)
087  A   1 (-3.5A)
087  A   1 (-3.8A)
087  A   1 (-4.3A)
087  A   1 (-2.5A)
087  A   1 ( 3.8A)
0.66A 4urnA-3u2kA:
29.6
4urnA-3u2kA:
50.66
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URN_A_NOVA2000_1
(DNA TOPOISOMERASE
IV, B SUBUNIT)
3u2k DNA GYRASE SUBUNIT B
(Staphylococcus
aureus)
9 / 11 ASN A  54
SER A  55
GLU A  58
ASP A  81
ARG A  84
PRO A  87
ILE A 102
ARG A 144
THR A 173
087  A   1 (-3.9A)
087  A   1 (-3.3A)
087  A   1 (-3.4A)
087  A   1 (-3.5A)
087  A   1 (-3.8A)
087  A   1 (-4.3A)
None
087  A   1 (-2.5A)
087  A   1 ( 3.8A)
0.65A 4urnA-3u2kA:
29.6
4urnA-3u2kA:
50.66
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URN_B_NOVB2000_1
(DNA TOPOISOMERASE
IV, B SUBUNIT)
3u2k DNA GYRASE SUBUNIT B
(Staphylococcus
aureus)
10 / 11 ASN A  54
SER A  55
ASP A  57
GLU A  58
ASP A  81
ARG A  84
PRO A  87
ILE A 102
ARG A 144
THR A 173
087  A   1 (-3.9A)
087  A   1 (-3.3A)
MG  A 234 ( 4.8A)
087  A   1 (-3.4A)
087  A   1 (-3.5A)
087  A   1 (-3.8A)
087  A   1 (-4.3A)
None
087  A   1 (-2.5A)
087  A   1 ( 3.8A)
0.56A 4urnB-3u2kA:
26.5
4urnB-3u2kA:
50.66
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URN_C_NOVC2000_1
(DNA TOPOISOMERASE
IV, B SUBUNIT)
3u2k DNA GYRASE SUBUNIT B
(Staphylococcus
aureus)
10 / 11 ASN A  54
SER A  55
ASP A  57
GLU A  58
ASP A  81
ARG A  84
PRO A  87
ILE A 102
ARG A 144
THR A 173
087  A   1 (-3.9A)
087  A   1 (-3.3A)
MG  A 234 ( 4.8A)
087  A   1 (-3.4A)
087  A   1 (-3.5A)
087  A   1 (-3.8A)
087  A   1 (-4.3A)
None
087  A   1 (-2.5A)
087  A   1 ( 3.8A)
0.53A 4urnC-3u2kA:
29.3
4urnC-3u2kA:
50.66
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URO_A_NOVA2000_1
(DNA GYRASE SUBUNIT B)
3u2k DNA GYRASE SUBUNIT B
(Staphylococcus
aureus)
6 / 12 ASN A  54
SER A  55
ASP A  81
ILE A  86
GLN A  91
ILE A 102
087  A   1 (-3.9A)
087  A   1 (-3.3A)
087  A   1 (-3.5A)
087  A   1 (-4.4A)
None
None
1.12A 4uroA-3u2kA:
31.7
4uroA-3u2kA:
84.42
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URO_A_NOVA2000_1
(DNA GYRASE SUBUNIT B)
3u2k DNA GYRASE SUBUNIT B
(Staphylococcus
aureus)
10 / 12 ASN A  54
SER A  55
GLU A  58
ASP A  81
ARG A  84
ILE A  86
PRO A  87
ASP A  89
ILE A 102
ARG A 144
087  A   1 (-3.9A)
087  A   1 (-3.3A)
087  A   1 (-3.4A)
087  A   1 (-3.5A)
087  A   1 (-3.8A)
087  A   1 (-4.4A)
087  A   1 (-4.3A)
None
None
087  A   1 (-2.5A)
0.36A 4uroA-3u2kA:
31.7
4uroA-3u2kA:
84.42
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URO_B_NOVB2000_1
(DNA GYRASE SUBUNIT B)
3u2k DNA GYRASE SUBUNIT B
(Staphylococcus
aureus)
6 / 12 ASN A  54
SER A  55
ASP A  81
ILE A  86
GLN A  91
ILE A 102
087  A   1 (-3.9A)
087  A   1 (-3.3A)
087  A   1 (-3.5A)
087  A   1 (-4.4A)
None
None
1.18A 4uroB-3u2kA:
32.0
4uroB-3u2kA:
84.42
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URO_B_NOVB2000_1
(DNA GYRASE SUBUNIT B)
3u2k DNA GYRASE SUBUNIT B
(Staphylococcus
aureus)
10 / 12 ASN A  54
SER A  55
GLU A  58
ASP A  81
ARG A  84
ILE A  86
PRO A  87
ASP A  89
ILE A 102
ARG A 144
087  A   1 (-3.9A)
087  A   1 (-3.3A)
087  A   1 (-3.4A)
087  A   1 (-3.5A)
087  A   1 (-3.8A)
087  A   1 (-4.4A)
087  A   1 (-4.3A)
None
None
087  A   1 (-2.5A)
0.32A 4uroB-3u2kA:
32.0
4uroB-3u2kA:
84.42
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URO_C_NOVC2000_1
(DNA GYRASE SUBUNIT B)
3u2k DNA GYRASE SUBUNIT B
(Staphylococcus
aureus)
10 / 12 ASN A  54
GLU A  58
ASP A  81
ARG A  84
ILE A  86
PRO A  87
ASP A  89
ALA A  98
ILE A 102
ARG A 144
087  A   1 (-3.9A)
087  A   1 (-3.4A)
087  A   1 (-3.5A)
087  A   1 (-3.8A)
087  A   1 (-4.4A)
087  A   1 (-4.3A)
None
None
None
087  A   1 (-2.5A)
0.31A 4uroC-3u2kA:
32.0
4uroC-3u2kA:
84.42
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URO_C_NOVC2000_1
(DNA GYRASE SUBUNIT B)
3u2k DNA GYRASE SUBUNIT B
(Staphylococcus
aureus)
8 / 12 ASN A  54
GLU A  58
ASP A  81
ILE A  86
PRO A  87
GLN A  91
ALA A  98
ILE A 102
087  A   1 (-3.9A)
087  A   1 (-3.4A)
087  A   1 (-3.5A)
087  A   1 (-4.4A)
087  A   1 (-4.3A)
None
None
None
0.98A 4uroC-3u2kA:
32.0
4uroC-3u2kA:
84.42
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URO_D_NOVD2000_1
(DNA GYRASE SUBUNIT B)
3u2k DNA GYRASE SUBUNIT B
(Staphylococcus
aureus)
11 / 12 ASN A  54
SER A  55
GLU A  58
ASP A  81
ARG A  84
ILE A  86
PRO A  87
ASP A  89
ILE A 102
ARG A 144
THR A 173
087  A   1 (-3.9A)
087  A   1 (-3.3A)
087  A   1 (-3.4A)
087  A   1 (-3.5A)
087  A   1 (-3.8A)
087  A   1 (-4.4A)
087  A   1 (-4.3A)
None
None
087  A   1 (-2.5A)
087  A   1 ( 3.8A)
0.40A 4uroD-3u2kA:
31.3
4uroD-3u2kA:
84.42