SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '3upg'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2H4J_A_NCAA1002_0
(NAD-DEPENDENT
DEACETYLASE)		 3upg OUTER MEMBRANE
PROTEIN C
(Salmonella
enterica) 		4 / 5 ILE A 310
ASN A 311
ILE A 329
ASP A 328
 None
None
None
CA  A 402 (-4.2A)
 1.07A 2h4jA-3upgA:
undetectable		 2h4jA-3upgA:
20.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2P2F_B_ACTB653_0
(ACETYL-COENZYME A
SYNTHETASE)		 3upg OUTER MEMBRANE
PROTEIN C
(Salmonella
enterica) 		4 / 4 VAL A 208
THR A 183
VAL A  96
GLY A  95
 None
 1.10A 2p2fB-3upgA:
undetectable		 2p2fB-3upgA:
19.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3KL3_A_DHIA403_0
(GLUCURONOXYLANASE
XYNC)		 3upg OUTER MEMBRANE
PROTEIN C
(Salmonella
enterica) 		4 / 4 GLY A  54
TYR A  53
GLY A  79
ASP A  89
 None
 0.76A 3kl3A-3upgA:
undetectable		 3kl3A-3upgA:
23.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3WRK_D_CAMD502_0
(CAMPHOR
5-MONOOXYGENASE)		 3upg OUTER MEMBRANE
PROTEIN C
(Salmonella
enterica) 		4 / 5 LEU A 107
GLY A 112
THR A 114
VAL A 287
 None
 1.00A 3wrkD-3upgA:
undetectable		 3wrkD-3upgA:
19.44
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5IZJ_F_AZ1F2_1
(CAMP-DEPENDENT
PROTEIN KINASE
CATALYTIC SUBUNIT
ALPHA
47P-AZ1-DAR-DAR-DAR)		 3upg OUTER MEMBRANE
PROTEIN C
(Salmonella
enterica) 		5 / 7 GLY A  52
GLY A  54
PHE A  40
GLY A  42
LEU A  11
 None
 0.94A 5izjB-3upgA:
undetectable		 5izjB-3upgA:
20.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5V1S_A_SAMA604_0
(RADICAL SAM)		 3upg OUTER MEMBRANE
PROTEIN C
(Salmonella
enterica) 		5 / 9 THR A 229
SER A 227
GLN A 225
ASN A 246
TYR A  98
 None
 1.46A 5v1sA-3upgA:
0.0		 5v1sA-3upgA:
20.55
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5YSI_A_NCAA1001_0
(UBIQUITINATING/DEUBI
QUITINATING ENZYME
SDEA)		 3upg OUTER MEMBRANE
PROTEIN C
(Salmonella
enterica) 		4 / 6 GLY A 212
SER A 177
THR A 169
VAL A 100
 None
 0.93A 5ysiA-3upgA:
undetectable		 5ysiA-3upgA:
18.38