SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '3vb9'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1JB0_A_PQNA2001_1
(PHOTOSYSTEM I P700
CHLOROPHYLL A
APOPROTEIN A1)		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		5 / 9 PHE A 359
SER A 354
GLY A 351
ALA A 132
LEU A 148
 None
None
MG  A 501 ( 4.5A)
MG  A 501 ( 3.8A)
None
 1.15A 1jb0A-3vb9A:
undetectable		 1jb0A-3vb9A:
21.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1QZZ_A_ACTA421_0
(ACLACINOMYCIN-10-HYD
ROXYLASE)		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		5 / 8 TYR A 177
GLY A 154
GLY A 156
GLY A 157
LEU A 126
 None
 1.02A 1qzzA-3vb9A:
undetectable		 1qzzA-3vb9A:
19.76
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1RS7_A_ACTA860_0
(NITRIC-OXIDE
SYNTHASE, BRAIN)		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		4 / 5 GLY A  99
ILE A 235
TRP A  73
VAL A  76
 None
 1.18A 1rs7A-3vb9A:
undetectable		 1rs7A-3vb9A:
21.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1UPF_A_URFA999_1
(URACIL
PHOSPHORIBOSYLTRANSF
ERASE)		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		4 / 5 MET A 134
ALA A 132
TYR A 109
ILE A 190
 None
MG  A 501 ( 3.8A)
None
None
 1.26A 1upfA-3vb9A:
undetectable		 1upfA-3vb9A:
20.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1UPF_D_URFD999_1
(URACIL
PHOSPHORIBOSYLTRANSF
ERASE)		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		4 / 4 MET A 134
ALA A 132
TYR A 109
ILE A 190
 None
MG  A 501 ( 3.8A)
None
None
 1.24A 1upfD-3vb9A:
undetectable		 1upfD-3vb9A:
20.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3D1Y_A_ROCA201_2
(HIV-1 PROTEASE)		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		5 / 9 LEU A 160
GLY A  86
PRO A 163
VAL A 162
ILE A 161
 None
 1.14A 3d1yB-3vb9A:
undetectable		 3d1yB-3vb9A:
13.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3JB3_A_SAMA1102_1
(STRUCTURAL PROTEIN
VP3)		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		3 / 3 ARG A 328
ASP A 137
ASP A 326
 None
 0.88A 3jb3A-3vb9A:
undetectable		 3jb3A-3vb9A:
18.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3JQ7_B_DX2B271_1
(PTERIDINE REDUCTASE
1)		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		4 / 8 PHE A 457
ASP A 302
TYR A 367
LEU A 406
 None
 1.25A 3jq7B-3vb9A:
undetectable		 3jq7B-3vb9A:
20.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3KK6_B_CELB1701_1
(PROSTAGLANDIN G/H
SYNTHASE 1)		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		5 / 12 VAL A 262
LEU A 266
TRP A 243
ILE A 249
GLY A  64
 None
 1.20A 3kk6B-3vb9A:
undetectable		 3kk6B-3vb9A:
20.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3PCQ_A_PQNA847_1
(PHOTOSYSTEM I P700
CHLOROPHYLL A
APOPROTEIN A1)		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		5 / 9 PHE A 359
SER A 354
GLY A 351
ALA A 132
LEU A 148
 None
None
MG  A 501 ( 4.5A)
MG  A 501 ( 3.8A)
None
 1.15A 3pcqA-3vb9A:
undetectable		 3pcqA-3vb9A:
21.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4D33_A_ACTA860_0
(NITRIC OXIDE
SYNTHASE,
ENDOTHELIAL)		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		4 / 5 GLY A  99
ILE A 235
TRP A  73
VAL A  76
 None
 1.10A 4d33A-3vb9A:
undetectable		 4d33A-3vb9A:
19.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4D33_B_ACTB860_0
(NITRIC OXIDE
SYNTHASE,
ENDOTHELIAL)		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		4 / 5 GLY A  99
ILE A 235
TRP A  73
VAL A  76
 None
 1.12A 4d33B-3vb9A:
undetectable		 4d33B-3vb9A:
19.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4D39_B_ACTB860_0
(NITRIC OXIDE
SYNTHASE,
ENDOTHELIAL)		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		4 / 6 GLY A  99
ILE A 235
TRP A  73
VAL A  76
 None
 1.11A 4d39B-3vb9A:
undetectable		 4d39B-3vb9A:
19.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4FFW_A_715A801_2
(DIPEPTIDYL PEPTIDASE
4)		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		3 / 3 PHE A 457
TYR A 343
TYR A 303
 None
 0.80A 4ffwA-3vb9A:
undetectable		 4ffwA-3vb9A:
20.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4FGK_A_0TXA302_1
(RIBOSYLDIHYDRONICOTI
NAMIDE DEHYDROGENASE
[QUINONE])		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		4 / 7 GLY A 156
GLY A 157
TYR A 159
GLU A 128
 None
 0.98A 4fgkB-3vb9A:
undetectable		 4fgkB-3vb9A:
18.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4FGK_A_0TXA302_1
(RIBOSYLDIHYDRONICOTI
NAMIDE DEHYDROGENASE
[QUINONE])		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		4 / 7 GLY A 156
GLY A 157
TYR A 177
GLU A 128
 None
 1.10A 4fgkB-3vb9A:
undetectable		 4fgkB-3vb9A:
18.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4IJI_F_BEZF501_0
(GLUTATHIONE
S-TRANSFERASE-LIKE
PROTEIN YIBF)		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		4 / 8 ALA A 298
SER A 300
ARG A 405
TYR A 303
 None
 1.10A 4ijiF-3vb9A:
undetectable		 4ijiF-3vb9A:
16.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4IJI_H_BEZH501_0
(GLUTATHIONE
S-TRANSFERASE-LIKE
PROTEIN YIBF)		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		4 / 7 ALA A 298
SER A 300
ARG A 405
TYR A 303
 None
 1.11A 4ijiH-3vb9A:
undetectable		 4ijiH-3vb9A:
16.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4KLR_B_CHDB503_0
(FERROCHELATASE,
MITOCHONDRIAL)		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		4 / 8 LEU A 266
SER A  68
VAL A 293
GLY A 294
 None
 0.91A 4klrB-3vb9A:
undetectable		 4klrB-3vb9A:
21.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4L6V_1_PQN12001_1
(PHOTOSYSTEM I P700
CHLOROPHYLL A
APOPROTEIN A1
FUSION PROTEIN OF
PHOTOSYSTEM I
SUBUNIT III AND
SUBUNIT IX)		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		5 / 11 PHE A 359
SER A 354
GLY A 351
ALA A 132
LEU A 148
 None
None
MG  A 501 ( 4.5A)
MG  A 501 ( 3.8A)
None
 1.14A 4l6v1-3vb9A:
undetectable
4l6v6-3vb9A:
undetectable		 4l6v1-3vb9A:
20.19
4l6v6-3vb9A:
14.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4MBS_B_MRVB1101_2
(CHIMERA PROTEIN OF
C-C CHEMOKINE
RECEPTOR TYPE 5 AND
RUBREDOXIN)		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		4 / 5 TYR A 463
THR A 233
LEU A 406
THR A 458
 None
 1.34A 4mbsB-3vb9A:
undetectable		 4mbsB-3vb9A:
20.70
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4XDT_A_ACTA409_0
(FAD:PROTEIN FMN
TRANSFERASE)		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		4 / 5 ILE A 208
VAL A 110
ILE A 192
VAL A 205
 None
 0.76A 4xdtA-3vb9A:
undetectable		 4xdtA-3vb9A:
20.86
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4XK8_A_PQNA844_1
(PHOTOSYSTEM I P700
CHLOROPHYLL A
APOPROTEIN A1)		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		4 / 7 PHE A 359
SER A 354
ALA A 132
LEU A 148
 None
None
MG  A 501 ( 3.8A)
None
 1.09A 4xk8A-3vb9A:
undetectable		 4xk8A-3vb9A:
20.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4XUM_A_IMNA502_1
(PEROXISOME
PROLIFERATOR-ACTIVAT
ED RECEPTOR GAMMA)		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		4 / 7 GLU A  72
ILE A 246
LEU A 335
ILE A  65
 None
 0.92A 4xumA-3vb9A:
undetectable		 4xumA-3vb9A:
21.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ZZ8_A_GCSA208_1
(GLUCANASE/CHITOSANAS
E)		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		4 / 7 GLU A 402
ARG A 295
TYR A 303
ALA A 298
 None
 1.10A 4zz8A-3vb9A:
1.3		 4zz8A-3vb9A:
13.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5L8R_A_PQNA844_1
(PHOTOSYSTEM I P700
CHLOROPHYLL A
APOPROTEIN A1)		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		5 / 9 PHE A 359
SER A 354
GLY A 351
ALA A 132
LEU A 148
 None
None
MG  A 501 ( 4.5A)
MG  A 501 ( 3.8A)
None
 1.15A 5l8rA-3vb9A:
undetectable		 5l8rA-3vb9A:
21.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5MVN_D_PFLD410_1
(PROTON-GATED ION
CHANNEL)		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		5 / 10 ILE A 208
ILE A 190
VAL A 224
TYR A 187
ILE A 111
 None
 1.40A 5mvnD-3vb9A:
undetectable		 5mvnD-3vb9A:
9.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5UBB_A_SAMA301_1
(ALPHA N-TERMINAL
PROTEIN
METHYLTRANSFERASE 1B)		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		4 / 5 GLY A 351
ARG A 362
ASP A 145
MET A 134
 MG  A 501 ( 4.5A)
None
None
None
 1.25A 5ubbA-3vb9A:
undetectable		 5ubbA-3vb9A:
19.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5VLM_B_CVIB301_1
(REGULATORY PROTEIN
TETR)		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		4 / 8 GLY A  99
GLN A 140
TRP A  73
ASP A 401
 None
 1.03A 5vlmB-3vb9A:
undetectable		 5vlmB-3vb9A:
17.07
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6EF6_A_BEZA401_0
(AMINOGLYCOSIDE
PHOSPHOTRANSFERASE)		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		5 / 9 LEU A 122
THR A 119
PRO A 181
VAL A 186
ILE A 161
 None
 1.24A 6ef6A-3vb9A:
undetectable		 6ef6A-3vb9A:
19.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6FGD_A_ACTA820_0
(GEPHYRIN)		 3vb9 UNCHARACTERIZED
PROTEIN VPA0735
(Vibrio
parahaemolyticus) 		4 / 5 GLU A 454
PRO A 452
THR A 450
GLN A 449
 None
 1.11A 6fgdA-3vb9A:
undetectable		 6fgdA-3vb9A:
23.14