SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '3vdy'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)

Filter list by:

	DrReposER ID / Desc.	Hit PDBID	Hit Macromolecule	Res. Matches	Interface	HETATM	RMSD	Dali Z-score	Seq. Identity (%)
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	1E7B_A_HLTA4003_1 (SERUM ALBUMIN)	3vdy	SINGLE-STRANDED DNA-BINDING PROTEIN SSBB (Bacillus subtilis)	5 / 9	LEU A 11 VAL A 100 GLY A 72 ALA A 97 LEU A 53	None	1.13A	1e7bA-3vdyA: undetectable	1e7bA-3vdyA: 12.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	4XMF_A_HSMA202_1 (NITROPHORIN-7)	3vdy	SINGLE-STRANDED DNA-BINDING PROTEIN SSBB (Bacillus subtilis)	3 / 3	ASP A 104 LEU A 11 GLY A 68	None	0.53A	4xmfA-3vdyA: undetectable	4xmfA-3vdyA: 20.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	6E5Z_A_CCSA106_0 (PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1)	3vdy	SINGLE-STRANDED DNA-BINDING PROTEIN SSBB (Bacillus subtilis)	5 / 10	GLY A 9 ASN A 34 ALA A 32 THR A 12 GLY A 68	None	0.99A	6e5zA-3vdyA: undetectable	6e5zA-3vdyA: 21.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	6HU9_E_PCFE202_0 (CYTOCHROME C OXIDASE POLYPEPTIDE 5A, MITOCHONDRIAL CYTOCHROME C OXIDASE SUBUNIT 1)	3vdy	SINGLE-STRANDED DNA-BINDING PROTEIN SSBB (Bacillus subtilis)	4 / 8	ALA A 32 VAL A 33 ARG A 10 ASP A 104	None	0.97A	6hu9a-3vdyA: undetectable 6hu9e-3vdyA: undetectable	6hu9a-3vdyA: 12.07 6hu9e-3vdyA: 18.66

[["DrReposER ID","Desc.","Hit PDB","Hit molecule","Hit organism","Res. no.","Interface","HETATM","RMSD","Z-score","Seq ID"],["1E7B_A_HLTA4003_1","SERUM ALBUMIN","3vdy","SINGLE-STRANDED DNA-BINDING PROTEIN SSBB","Bacillus subtilis",5,"LEU A  11;VAL A 100;GLY A  72;ALA A  97;LEU A  53","None","1.13A","1e7bA-3vdyA:undetectable","1e7bA-3vdyA:12.81"],["4XMF_A_HSMA202_1","NITROPHORIN-7","3vdy","SINGLE-STRANDED DNA-BINDING PROTEIN SSBB","Bacillus subtilis",3,"ASP A 104;LEU A  11;GLY A  68","None","0.53A","4xmfA-3vdyA:undetectable","4xmfA-3vdyA:20.56"],["6E5Z_A_CCSA106_0","PROTEIN\/NUCLEIC ACID DEGLYCASE DJ-1","3vdy","SINGLE-STRANDED DNA-BINDING PROTEIN SSBB","Bacillus subtilis",5,"GLY A   9;ASN A  34;ALA A  32;THR A  12;GLY A  68","None","0.99A","6e5zA-3vdyA:undetectable","6e5zA-3vdyA:21.61"],["6HU9_E_PCFE202_0","CYTOCHROME C OXIDASE POLYPEPTIDE 5A, MITOCHONDRIAL;CYTOCHROME C OXIDASE SUBUNIT 1","3vdy","SINGLE-STRANDED DNA-BINDING PROTEIN SSBB","Bacillus subtilis",4,"ALA A  32;VAL A  33;ARG A  10;ASP A 104","None","0.97A","6hu9a-3vdyA:undetectable;6hu9e-3vdyA:undetectable","6hu9a-3vdyA:12.07;6hu9e-3vdyA:18.66"]]