SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '3vnk'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1AZM_A_AZMA262_1
(CARBONIC ANHYDRASE I)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		4 / 8 PHE A 246
HIS A 209
HIS A 207
THR A  63
 FUD  A 301 (-4.7A)
MN  A 302 ( 3.2A)
None
None
 1.03A 1azmA-3vnkA:
undetectable		 1azmA-3vnkA:
23.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1DMA_B_NCAB700_0
(EXOTOXIN A)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		4 / 6 HIS A  66
GLY A  67
ALA A  36
GLU A  15
 None
FUD  A 301 ( 4.2A)
None
None
 1.03A 1dmaB-3vnkA:
undetectable		 1dmaB-3vnkA:
21.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1LWE_A_NVPA999_1
(HIV-1 REVERSE
TRANSCRIPTASE)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		4 / 7 VAL A 242
TYR A   7
TYR A   6
GLY A   4
 None
None
FUD  A 301 (-4.6A)
None
 1.01A 1lweA-3vnkA:
undetectable		 1lweA-3vnkA:
18.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1P7L_C_SAMC685_1
(S-ADENOSYLMETHIONINE
SYNTHETASE)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		4 / 8 ALA A 107
ASP A 115
ILE A 114
ILE A 120
 None
 0.89A 1p7lD-3vnkA:
undetectable		 1p7lD-3vnkA:
20.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1P7L_C_SAMC885_0
(S-ADENOSYLMETHIONINE
SYNTHETASE)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		4 / 8 ALA A 107
ASP A 115
ILE A 114
ILE A 120
 None
 0.91A 1p7lC-3vnkA:
undetectable		 1p7lC-3vnkA:
20.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1RG9_A_SAMA385_1
(S-ADENOSYLMETHIONINE
SYNTHETASE)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		4 / 8 ALA A 107
ASP A 115
ILE A 114
ILE A 120
 None
 0.89A 1rg9B-3vnkA:
undetectable		 1rg9B-3vnkA:
20.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1RG9_B_SAMB485_0
(S-ADENOSYLMETHIONINE
SYNTHETASE)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		4 / 8 ALA A 107
ASP A 115
ILE A 114
ILE A 120
 None
 0.89A 1rg9A-3vnkA:
undetectable		 1rg9A-3vnkA:
20.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1RG9_C_SAMC585_1
(S-ADENOSYLMETHIONINE
SYNTHETASE)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		4 / 8 ALA A 107
ASP A 115
ILE A 114
ILE A 120
 None
 0.89A 1rg9D-3vnkA:
undetectable		 1rg9D-3vnkA:
20.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1RG9_C_SAMC685_0
(S-ADENOSYLMETHIONINE
SYNTHETASE)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		4 / 8 ALA A 107
ASP A 115
ILE A 114
ILE A 120
 None
 0.90A 1rg9C-3vnkA:
undetectable		 1rg9C-3vnkA:
20.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2HA2_B_SCKB951_1
(ACETYLCHOLINESTERASE)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		4 / 8 TYR A 158
TRP A 112
TYR A 109
HIS A  66
 None
FUD  A 301 (-4.1A)
None
None
 1.48A 2ha2B-3vnkA:
undetectable		 2ha2B-3vnkA:
18.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2NV4_A_ACTA148_0
(UPF0066 PROTEIN
AF_0241)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		3 / 3 VAL A 130
GLU A 127
GLU A 131
 None
 0.81A 2nv4A-3vnkA:
undetectable		 2nv4A-3vnkA:
17.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3K13_A_THHA642_0
(5-METHYLTETRAHYDROFO
LATE-HOMOCYSTEINE
METHYLTRANSFERASE)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		5 / 12 GLU A 227
GLY A 196
VAL A 241
GLY A 229
ILE A 228
 None
 1.12A 3k13A-3vnkA:
5.8		 3k13A-3vnkA:
21.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3K13_B_THHB643_0
(5-METHYLTETRAHYDROFO
LATE-HOMOCYSTEINE
METHYLTRANSFERASE)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		5 / 12 GLU A 227
GLY A 196
VAL A 241
GLY A 229
ILE A 228
 None
 1.13A 3k13B-3vnkA:
7.8		 3k13B-3vnkA:
21.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3K13_C_THHC643_0
(5-METHYLTETRAHYDROFO
LATE-HOMOCYSTEINE
METHYLTRANSFERASE)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		5 / 12 GLU A 227
GLY A 196
VAL A 241
GLY A 229
ILE A 228
 None
 1.12A 3k13C-3vnkA:
9.2		 3k13C-3vnkA:
21.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4BLV_B_SAMB1281_0
(RIBOSOMAL RNA LARGE
SUBUNIT
METHYLTRANSFERASE J)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		5 / 12 GLY A 206
GLY A 239
SER A 240
LEU A 149
GLY A 106
 None
None
None
None
FUD  A 301 ( 4.0A)
 0.78A 4blvB-3vnkA:
undetectable		 4blvB-3vnkA:
22.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4GBO_A_CUA301_0
(E7)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		4 / 5 ALA A  37
HIS A  66
GLN A  72
TYR A  89
 None
 1.46A 4gboA-3vnkA:
undetectable		 4gboA-3vnkA:
22.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4GBO_B_CUB301_0
(E7)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		4 / 5 ALA A  37
HIS A  66
GLN A  72
TYR A  89
 None
 1.46A 4gboB-3vnkA:
undetectable		 4gboB-3vnkA:
22.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4JUO_F_LFXF101_1
(DNA TOPOISOMERASE 4
SUBUNIT A
DNA TOPOISOMERASE 4
SUBUNIT B
E-SITE DNA)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		3 / 4 SER A 240
GLY A 106
GLU A 156
 None
FUD  A 301 ( 4.0A)
FUD  A 301 (-2.9A)
 0.61A 4juoA-3vnkA:
undetectable
4juoC-3vnkA:
undetectable		 4juoA-3vnkA:
20.97
4juoC-3vnkA:
18.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4NDN_A_SAMA407_1
(S-ADENOSYLMETHIONINE
SYNTHASE ISOFORM
TYPE-2)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		4 / 8 ALA A 107
ASP A 115
ILE A 114
ILE A 120
 None
 0.94A 4ndnB-3vnkA:
undetectable		 4ndnB-3vnkA:
21.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4NDN_C_SAMC405_1
(S-ADENOSYLMETHIONINE
SYNTHASE ISOFORM
TYPE-2)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		4 / 8 ALA A 107
ASP A 115
ILE A 114
ILE A 120
 None
 0.95A 4ndnD-3vnkA:
undetectable		 4ndnD-3vnkA:
21.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4QB9_D_PARD500_1
(ENHANCED
INTRACELLULAR
SURVIVAL PROTEIN)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		4 / 8 PHE A  30
THR A 210
GLU A 150
ASP A 183
 None
None
FUD  A 301 ( 2.4A)
MN  A 302 ( 3.2A)
 1.41A 4qb9D-3vnkA:
undetectable		 4qb9D-3vnkA:
18.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4QTU_B_SAMB301_1
(PUTATIVE
METHYLTRANSFERASE
BUD23)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		4 / 5 TYR A  89
GLN A  72
SER A  38
ASP A 183
 None
None
None
MN  A 302 ( 3.2A)
 1.42A 4qtuB-3vnkA:
undetectable		 4qtuB-3vnkA:
19.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5FSA_A_X2NA590_2
(CYP51 VARIANT1)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		3 / 3 PRO A  68
ILE A  32
SER A 110
 None
 0.75A 5fsaA-3vnkA:
undetectable		 5fsaA-3vnkA:
19.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5PAH_A_LDPA600_1
(PHENYLALANINE
4-MONOOXYGENASE)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		4 / 4 HIS A 207
HIS A 209
TYR A   6
GLU A  34
 None
MN  A 302 ( 3.2A)
FUD  A 301 (-4.6A)
None
 1.19A 5pahA-3vnkA:
undetectable		 5pahA-3vnkA:
22.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5UIZ_A_CUA301_0
(AA10A)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		4 / 5 ALA A  37
HIS A  66
GLN A  72
TYR A  89
 None
 1.45A 5uizA-3vnkA:
undetectable		 5uizA-3vnkA:
22.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5VOO_E_C2FE3001_0
(5-METHYLTETRAHYDROFO
LATE HOMOCYSTEINE
S-METHYLTRANSFERASE)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		5 / 12 GLU A 227
GLY A 196
VAL A 241
GLY A 229
ILE A 228
 None
 1.18A 5vooE-3vnkA:
8.2		 5vooE-3vnkA:
22.66
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5VOO_F_C2FF3001_0
(5-METHYLTETRAHYDROFO
LATE HOMOCYSTEINE
S-METHYLTRANSFERASE)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		5 / 12 GLU A 227
GLY A 196
VAL A 241
GLY A 229
ILE A 228
 None
 1.16A 5vooF-3vnkA:
6.9		 5vooF-3vnkA:
22.66
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5VOP_B_C2FB3001_0
(5-METHYLTETRAHYDROFO
LATE HOMOCYSTEINE
S-METHYLTRANSFERASE)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		5 / 12 GLU A 227
GLY A 196
VAL A 241
GLY A 229
ILE A 228
 None
 1.12A 5vopB-3vnkA:
3.7		 5vopB-3vnkA:
22.66
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6BXL_B_SAMB401_0
(2-(3-AMINO-3-CARBOXY
PROPYL)HISTIDINE
SYNTHASE)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		5 / 12 TYR A 204
LEU A 182
VAL A 173
VAL A 178
ASP A 146
 None
 1.23A 6bxlB-3vnkA:
undetectable		 6bxlB-3vnkA:
22.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6DWD_B_GLYB709_0
(DEOXYNUCLEOSIDE
TRIPHOSPHATE
TRIPHOSPHOHYDROLASE
SAMHD1)		 3vnk XYLOSE ISOMERASE
DOMAIN PROTEIN TIM
BARREL
([Clostridium]
cellulolyticum) 		4 / 5 GLY A 266
ASN A 265
ASP A 262
ARG A 248
 None
 1.30A 6dwdB-3vnkA:
undetectable
6dwdD-3vnkA:
undetectable		 6dwdB-3vnkA:
18.66
6dwdD-3vnkA:
18.66