SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '4ffl'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1BRP_A_RTLA183_0
(RETINOL BINDING
PROTEIN)		 4ffl PYLC
(Methanosarcina
barkeri) 		5 / 12 ALA A 242
MET A 224
GLY A 222
PHE A 268
LEU A 214
 None
 1.32A 1brpA-4fflA:
undetectable		 1brpA-4fflA:
18.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1FM6_X_BRLX504_1
(PEROXISOME
PROLIFERATOR
ACTIVATED RECEPTOR
GAMMA)		 4ffl PYLC
(Methanosarcina
barkeri) 		5 / 12 ILE A  38
GLY A  13
SER A 246
TYR A 286
HIS A 288
 None
None
LYS  A 901 ( 2.9A)
None
None
 1.35A 1fm6X-4fflA:
undetectable		 1fm6X-4fflA:
21.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1Z2B_C_VLBC800_2
(TUBULIN ALPHA CHAIN)		 4ffl PYLC
(Methanosarcina
barkeri) 		4 / 5 PRO A  69
VAL A   7
ASN A  71
VAL A  50
 None
None
ATP  A 908 (-4.1A)
ATP  A 908 (-3.7A)
 1.05A 1z2bC-4fflA:
undetectable		 1z2bC-4fflA:
23.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2BR4_E_SAME301_1
(CEPHALOSPORIN
HYDROXYLASE CMCI)		 4ffl PYLC
(Methanosarcina
barkeri) 		3 / 3 SER A  20
ASP A  65
CYH A  89
 None
 1.02A 2br4E-4fflA:
undetectable		 2br4E-4fflA:
20.16
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2C12_B_SPMB1433_1
(NITROALKANE OXIDASE)		 4ffl PYLC
(Methanosarcina
barkeri) 		5 / 11 MET A  25
VAL A  67
ALA A  66
LEU A   6
VAL A   7
 None
 1.50A 2c12B-4fflA:
undetectable		 2c12B-4fflA:
22.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2NNH_A_9CRA502_1
(CYTOCHROME P450 2C8)		 4ffl PYLC
(Methanosarcina
barkeri) 		5 / 12 ILE A 100
SER A 101
ILE A 240
LEU A 218
VAL A 172
 None
 1.03A 2nnhA-4fflA:
undetectable		 2nnhA-4fflA:
22.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2VCT_A_ASDA1223_1
(GLUTATHIONE
S-TRANSFERASE A2)		 4ffl PYLC
(Methanosarcina
barkeri) 		4 / 8 ILE A 322
ARG A 348
LEU A 352
LEU A 363
 None
 0.87A 2vctA-4fflA:
undetectable		 2vctA-4fflA:
20.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2VCT_B_ASDB1223_1
(GLUTATHIONE
S-TRANSFERASE A2)		 4ffl PYLC
(Methanosarcina
barkeri) 		4 / 8 ILE A 322
ARG A 348
LEU A 352
LEU A 363
 None
 0.88A 2vctB-4fflA:
undetectable		 2vctB-4fflA:
20.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2VN0_A_TDZA501_1
(CYTOCHROME P450 2C8)		 4ffl PYLC
(Methanosarcina
barkeri) 		5 / 12 ILE A   4
PHE A  93
LEU A  92
VAL A  70
ILE A 223
 None
 1.14A 2vn0A-4fflA:
undetectable		 2vn0A-4fflA:
22.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3AY0_A_ADNA401_1
(UNCHARACTERIZED
PROTEIN MJ0883)		 4ffl PYLC
(Methanosarcina
barkeri) 		5 / 10 ASP A  31
ASN A  33
ALA A  36
ASP A  49
VAL A  50
 ATP  A 908 (-2.7A)
None
ATP  A 908 ( 4.8A)
ATP  A 908 (-3.3A)
ATP  A 908 (-3.7A)
 0.83A 3ay0A-4fflA:
3.7		 3ay0A-4fflA:
22.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3AY0_B_ADNB402_1
(UNCHARACTERIZED
PROTEIN MJ0883)		 4ffl PYLC
(Methanosarcina
barkeri) 		5 / 10 GLY A   9
ASP A  31
ASN A  33
ASP A  49
VAL A  50
 ATP  A 908 ( 4.6A)
ATP  A 908 (-2.7A)
None
ATP  A 908 (-3.3A)
ATP  A 908 (-3.7A)
 0.86A 3ay0B-4fflA:
3.6		 3ay0B-4fflA:
22.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4QWP_B_GCSB304_1
(CHITOSANASE)		 4ffl PYLC
(Methanosarcina
barkeri) 		3 / 3 GLN A 247
SER A 138
ASP A 194
 CO3  A 907 (-4.1A)
ADP  A 902 (-3.2A)
None
 0.91A 4qwpA-4fflA:
undetectable
4qwpB-4fflA:
undetectable		 4qwpA-4fflA:
21.58
4qwpB-4fflA:
21.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4R29_D_SAMD301_1
(UNCHARACTERIZED
PROTEIN)		 4ffl PYLC
(Methanosarcina
barkeri) 		3 / 3 ARG A 243
GLU A 135
TYR A  98
 PO4  A 903 (-2.8A)
None
None
 0.94A 4r29D-4fflA:
undetectable		 4r29D-4fflA:
24.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5B2S_A_ACTA107_0
(CRISPR-ASSOCIATED
ENDONUCLEASE CAS9
GUIDE RNA)		 4ffl PYLC
(Methanosarcina
barkeri) 		3 / 3 VAL A  28
THR A   3
ARG A  63
 None
 0.70A 5b2sB-4fflA:
undetectable		 5b2sB-4fflA:
14.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5B2T_A_ACTA108_0
(CRISPR-ASSOCIATED
ENDONUCLEASE CAS9
GUIDE RNA)		 4ffl PYLC
(Methanosarcina
barkeri) 		3 / 3 VAL A  28
THR A   3
ARG A  63
 None
 0.69A 5b2tB-4fflA:
undetectable		 5b2tB-4fflA:
14.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6DJZ_A_GMJA301_1
(SIGMA NON-OPIOID
INTRACELLULAR
RECEPTOR 1)		 4ffl PYLC
(Methanosarcina
barkeri) 		4 / 6 SER A 136
ASP A 225
GLN A  12
GLU A 227
 LYS  A 901 ( 3.8A)
MG  A 906 ( 3.9A)
LYS  A 901 (-3.9A)
MG  A 906 (-2.7A)
 1.47A 6djzA-4fflA:
undetectable		 6djzA-4fflA:
20.16
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6DJZ_A_GMJA301_1
(SIGMA NON-OPIOID
INTRACELLULAR
RECEPTOR 1)		 4ffl PYLC
(Methanosarcina
barkeri) 		4 / 6 SER A 137
ASP A 241
GLN A  12
GLU A 239
 LYS  A 901 (-3.1A)
MG  A 905 ( 2.7A)
LYS  A 901 (-3.9A)
MG  A 905 ( 1.7A)
 1.49A 6djzA-4fflA:
undetectable		 6djzA-4fflA:
20.16
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6DJZ_B_GMJB301_1
(SIGMA NON-OPIOID
INTRACELLULAR
RECEPTOR 1)		 4ffl PYLC
(Methanosarcina
barkeri) 		4 / 6 ASP A 241
GLN A  12
GLU A 239
ALA A 141
 MG  A 905 ( 2.7A)
LYS  A 901 (-3.9A)
MG  A 905 ( 1.7A)
ADP  A 902 ( 4.2A)
 1.22A 6djzB-4fflA:
undetectable		 6djzB-4fflA:
20.16
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6HUP_E_DZPE502_0
(GAMMA-AMINOBUTYRIC
ACID RECEPTOR
SUBUNIT
ALPHA-1,GAMMA-AMINOB
UTYRIC ACID RECEPTOR
SUBUNIT ALPHA-1
GAMMA-AMINOBUTYRIC
ACID RECEPTOR
SUBUNIT BETA-3)		 4ffl PYLC
(Methanosarcina
barkeri) 		5 / 10 LEU A  11
MET A 334
THR A 333
LEU A 289
MET A 290
 LYS  A 901 (-3.6A)
None
None
None
None
 1.28A 6hupD-4fflA:
undetectable
6hupE-4fflA:
undetectable		 6hupD-4fflA:
13.20
6hupE-4fflA:
16.55