SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '4kny'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1BSX_A_T3A1_1
(PROTEIN (THYROID
HORMONE RECEPTOR
BETA))
4kny KDP OPERON
TRANSCRIPTIONAL
REGULATORY PROTEIN
KDPE

(Escherichia
coli)
5 / 12 ILE A  49
ARG A  68
ALA A 115
LEU A  48
LEU A 108
None
1.12A 1bsxA-4knyA:
undetectable
1bsxA-4knyA:
21.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1BSX_B_T3B2_1
(PROTEIN (THYROID
HORMONE RECEPTOR
BETA))
4kny KDP OPERON
TRANSCRIPTIONAL
REGULATORY PROTEIN
KDPE

(Escherichia
coli)
5 / 12 ILE A  49
ARG A  68
ALA A 115
LEU A  48
LEU A 108
None
1.12A 1bsxB-4knyA:
undetectable
1bsxB-4knyA:
21.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1XDK_F_9CRF1600_2
(RETINOIC ACID
RECEPTOR, BETA)
4kny KDP OPERON
TRANSCRIPTIONAL
REGULATORY PROTEIN
KDPE

(Escherichia
coli)
3 / 3 LEU A  51
PHE A  63
ARG A  44
None
0.81A 1xdkF-4knyA:
undetectable
1xdkF-4knyA:
21.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2E5D_A_NCAA1501_0
(NICOTINAMIDE
PHOSPHORIBOSYLTRANSF
ERASE)
4kny KDP OPERON
TRANSCRIPTIONAL
REGULATORY PROTEIN
KDPE

(Escherichia
coli)
4 / 7 ARG A 158
ALA A  41
ARG A 141
ASP A  66
None
0.94A 2e5dA-4knyA:
undetectable
2e5dB-4knyA:
undetectable
2e5dA-4knyA:
21.17
2e5dB-4knyA:
21.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2E5D_B_NCAB1502_0
(NICOTINAMIDE
PHOSPHORIBOSYLTRANSF
ERASE)
4kny KDP OPERON
TRANSCRIPTIONAL
REGULATORY PROTEIN
KDPE

(Escherichia
coli)
4 / 7 ASP A  66
ARG A 158
ALA A  41
ARG A 141
None
1.00A 2e5dA-4knyA:
undetectable
2e5dB-4knyA:
undetectable
2e5dA-4knyA:
21.17
2e5dB-4knyA:
21.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2J9D_A_ACTA1117_0
(HYPOTHETICAL
NITROGEN REGULATORY
PII-LIKE PROTEIN
MJ0059)
4kny KDP OPERON
TRANSCRIPTIONAL
REGULATORY PROTEIN
KDPE

(Escherichia
coli)
3 / 3 ASP A 206
ARG A 211
ARG A 209
None
1.09A 2j9dA-4knyA:
undetectable
2j9dC-4knyA:
undetectable
2j9dA-4knyA:
23.96
2j9dC-4knyA:
23.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3UVV_A_T3A501_1
(THYROID HORMONE
RECEPTOR ALPHA)
4kny KDP OPERON
TRANSCRIPTIONAL
REGULATORY PROTEIN
KDPE

(Escherichia
coli)
5 / 12 MET A  26
ALA A  20
LEU A  17
LEU A 108
LEU A 112
None
1.09A 3uvvA-4knyA:
undetectable
3uvvA-4knyA:
24.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4PFJ_B_ADNB502_1
(ADENOSYLHOMOCYSTEINA
SE)
4kny KDP OPERON
TRANSCRIPTIONAL
REGULATORY PROTEIN
KDPE

(Escherichia
coli)
5 / 12 ASP A  59
GLU A  62
ASP A  66
LEU A  51
GLY A  37
None
1.28A 4pfjB-4knyA:
6.5
4pfjB-4knyA:
22.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4PGF_B_ADNB502_1
(ADENOSYLHOMOCYSTEINA
SE)
4kny KDP OPERON
TRANSCRIPTIONAL
REGULATORY PROTEIN
KDPE

(Escherichia
coli)
5 / 12 ASP A  59
GLU A  62
ASP A  66
LEU A  51
GLY A  37
None
1.34A 4pgfB-4knyA:
6.3
4pgfB-4knyA:
22.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4RP8_C_ASCC501_0
(ASCORBATE-SPECIFIC
PERMEASE IIC
COMPONENT ULAA)
4kny KDP OPERON
TRANSCRIPTIONAL
REGULATORY PROTEIN
KDPE

(Escherichia
coli)
5 / 12 LEU A 108
ILE A   6
ILE A 105
ALA A  20
PHE A  16
None
0.96A 4rp8C-4knyA:
undetectable
4rp8C-4knyA:
20.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5IGZ_A_SPRA404_2
(MACROLIDE
2'-PHOSPHOTRANSFERAS
E II)
4kny KDP OPERON
TRANSCRIPTIONAL
REGULATORY PROTEIN
KDPE

(Escherichia
coli)
5 / 9 LEU A  34
ILE A  61
ARG A  68
ILE A  49
GLU A   8
None
1.37A 5igzA-4knyA:
undetectable
5igzA-4knyA:
22.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6G9B_A_IXXA609_1
(ENVELOPE
GLYCOPROTEIN,ENVELOP
E GLYCOPROTEIN
ENVELOPE
GLYCOPROTEIN)
4kny KDP OPERON
TRANSCRIPTIONAL
REGULATORY PROTEIN
KDPE

(Escherichia
coli)
5 / 7 ILE A 105
LEU A 108
VAL A   4
LEU A  21
LEU A 116
None
1.29A 6g9bA-4knyA:
0.8
6g9bB-4knyA:
undetectable
6g9bA-4knyA:
18.13
6g9bB-4knyA:
15.07