SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '4pdd'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ICU_D_NIOD223_1
(OXYGEN-INSENSITIVE
NAD(P)H
NITROREDUCTASE)		 4pdd TRAP DICARBOXYLATE
TRANSPORTER, DCTP
SUBUNIT
(Polaromonas
sp.
JS666) 		4 / 5 PHE A 226
SER A  74
THR A  40
PHE A 199
 None
None
EAX  A 401 (-3.2A)
EAX  A 401 (-4.2A)
 1.36A 1icuC-4pddA:
undetectable
1icuD-4pddA:
2.1		 1icuC-4pddA:
21.97
1icuD-4pddA:
21.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2G70_A_SAMA2001_0
(PHENYLETHANOLAMINE
N-METHYLTRANSFERASE)		 4pdd TRAP DICARBOXYLATE
TRANSPORTER, DCTP
SUBUNIT
(Polaromonas
sp.
JS666) 		5 / 12 ASP A 281
VAL A 278
HIS A  46
ALA A 123
PHE A 117
 None
 1.27A 2g70A-4pddA:
undetectable		 2g70A-4pddA:
20.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2G72_A_SAMA2001_0
(PHENYLETHANOLAMINE
N-METHYLTRANSFERASE)		 4pdd TRAP DICARBOXYLATE
TRANSPORTER, DCTP
SUBUNIT
(Polaromonas
sp.
JS666) 		5 / 12 ASP A 281
VAL A 278
HIS A  46
ALA A 123
PHE A 117
 None
 1.30A 2g72A-4pddA:
undetectable		 2g72A-4pddA:
20.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2TSR_D_D16D609_1
(THYMIDYLATE SYNTHASE)		 4pdd TRAP DICARBOXYLATE
TRANSPORTER, DCTP
SUBUNIT
(Polaromonas
sp.
JS666) 		5 / 9 ILE A 328
ASP A 134
LEU A 135
GLY A 132
THR A  98
 None
 1.25A 2tsrD-4pddA:
undetectable		 2tsrD-4pddA:
22.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2Y7H_C_SAMC530_1
(TYPE I RESTRICTION
ENZYME ECOKI M
PROTEIN)		 4pdd TRAP DICARBOXYLATE
TRANSPORTER, DCTP
SUBUNIT
(Polaromonas
sp.
JS666) 		3 / 3 TYR A  47
GLU A  79
ASN A 180
 EAX  A 401 (-4.1A)
EAX  A 401 (-3.0A)
None
 0.97A 2y7hC-4pddA:
undetectable		 2y7hC-4pddA:
20.82
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ZOA_A_ACRA1587_2
(TREHALOSE
SYNTHASE/AMYLASE
TRES)		 4pdd TRAP DICARBOXYLATE
TRANSPORTER, DCTP
SUBUNIT
(Polaromonas
sp.
JS666) 		3 / 3 ARG A 306
PHE A 115
PRO A 114
 None
 0.84A 3zoaB-4pddA:
undetectable		 3zoaB-4pddA:
18.76
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4NQA_H_9CRH501_1
(RETINOIC ACID
RECEPTOR RXR-ALPHA)		 4pdd TRAP DICARBOXYLATE
TRANSPORTER, DCTP
SUBUNIT
(Polaromonas
sp.
JS666) 		5 / 12 ALA A 267
ALA A 266
GLN A 268
LEU A 147
ALA A 148
 None
 1.13A 4nqaH-4pddA:
undetectable		 4nqaH-4pddA:
22.68
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4NQA_H_9CRH501_1
(RETINOIC ACID
RECEPTOR RXR-ALPHA)		 4pdd TRAP DICARBOXYLATE
TRANSPORTER, DCTP
SUBUNIT
(Polaromonas
sp.
JS666) 		5 / 12 ALA A 267
ALA A 266
GLN A 268
LEU A 245
ALA A 148
 None
 1.12A 4nqaH-4pddA:
undetectable		 4nqaH-4pddA:
22.68
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5DNU_A_BEZA319_0
(SHKAI2IB)		 4pdd TRAP DICARBOXYLATE
TRANSPORTER, DCTP
SUBUNIT
(Polaromonas
sp.
JS666) 		4 / 5 GLN A 329
ILE A 325
ILE A 110
TYR A 313
 None
None
None
MLA  A 404 (-4.4A)
 1.25A 5dnuA-4pddA:
undetectable		 5dnuA-4pddA:
20.86
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5DNV_A_BEZA304_0
(SHKAI2IB)		 4pdd TRAP DICARBOXYLATE
TRANSPORTER, DCTP
SUBUNIT
(Polaromonas
sp.
JS666) 		4 / 5 GLN A 329
ILE A 325
ILE A 110
TYR A 313
 None
None
None
MLA  A 404 (-4.4A)
 1.16A 5dnvA-4pddA:
undetectable		 5dnvA-4pddA:
20.86
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ESG_A_1YNA701_2
(LANOSTEROL 14-ALPHA
DEMETHYLASE)		 4pdd TRAP DICARBOXYLATE
TRANSPORTER, DCTP
SUBUNIT
(Polaromonas
sp.
JS666) 		4 / 4 LEU A 235
TYR A 240
PRO A 219
ILE A 221
 None
 1.20A 5esgA-4pddA:
undetectable		 5esgA-4pddA:
19.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5UAN_A_9CRA503_1
(RETINOIC ACID
RECEPTOR RXR-ALPHA)		 4pdd TRAP DICARBOXYLATE
TRANSPORTER, DCTP
SUBUNIT
(Polaromonas
sp.
JS666) 		5 / 12 ALA A 267
ALA A 266
GLN A 268
LEU A 147
ALA A 148
 None
 0.93A 5uanA-4pddA:
undetectable		 5uanA-4pddA:
22.68
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6APH_A_ADNA501_2
(ADENOSYLHOMOCYSTEINA
SE)		 4pdd TRAP DICARBOXYLATE
TRANSPORTER, DCTP
SUBUNIT
(Polaromonas
sp.
JS666) 		4 / 5 GLN A 268
THR A 271
THR A  96
LEU A 136
 None
None
None
MLA  A 403 ( 4.6A)
 1.39A 6aphA-4pddA:
undetectable		 6aphA-4pddA:
22.05
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6FGC_A_ACTA813_0
(GEPHYRIN)		 4pdd TRAP DICARBOXYLATE
TRANSPORTER, DCTP
SUBUNIT
(Polaromonas
sp.
JS666) 		3 / 3 THR A  53
ALA A 273
LYS A 276
 None
 0.62A 6fgcA-4pddA:
undetectable		 6fgcA-4pddA:
22.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6FGD_A_ACTA817_0
(GEPHYRIN)		 4pdd TRAP DICARBOXYLATE
TRANSPORTER, DCTP
SUBUNIT
(Polaromonas
sp.
JS666) 		3 / 3 THR A  53
ALA A 273
LYS A 276
 None
 0.60A 6fgdA-4pddA:
2.3		 6fgdA-4pddA:
22.95