SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '4rvo'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2IWK_A_CUA1599_0
(NITROUS OXIDE
REDUCTASE)		 4rvo PHENYLACETATE-COENZY
ME A LIGASE
(Bacteroides
thetaiotaomicron) 		3 / 3 CYH A 313
CYH A 251
HIS A 258
 ZN  A 501 (-2.4A)
ZN  A 501 (-2.3A)
ZN  A 501 (-3.2A)
 0.88A 2iwkA-4rvoA:
undetectable		 2iwkA-4rvoA:
20.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2IWK_B_CUB1599_0
(NITROUS OXIDE
REDUCTASE)		 4rvo PHENYLACETATE-COENZY
ME A LIGASE
(Bacteroides
thetaiotaomicron) 		3 / 3 CYH A 313
CYH A 251
HIS A 258
 ZN  A 501 (-2.4A)
ZN  A 501 (-2.3A)
ZN  A 501 (-3.2A)
 0.88A 2iwkB-4rvoA:
undetectable		 2iwkB-4rvoA:
20.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2JN3_A_JN3A131_1
(FATTY ACID-BINDING
PROTEIN, LIVER)		 4rvo PHENYLACETATE-COENZY
ME A LIGASE
(Bacteroides
thetaiotaomicron) 		5 / 12 VAL A 247
PHE A 259
LEU A  18
VAL A 266
LEU A 287
 None
 1.25A 2jn3A-4rvoA:
undetectable		 2jn3A-4rvoA:
16.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3DTU_B_CUB1022_0
(CYTOCHROME C OXIDASE
SUBUNIT 2)		 4rvo PHENYLACETATE-COENZY
ME A LIGASE
(Bacteroides
thetaiotaomicron) 		3 / 3 CYH A 313
CYH A 251
HIS A 258
 ZN  A 501 (-2.4A)
ZN  A 501 (-2.3A)
ZN  A 501 (-3.2A)
 0.88A 3dtuB-4rvoA:
undetectable		 3dtuB-4rvoA:
19.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3DTU_D_CUD3_0
(CYTOCHROME C OXIDASE
SUBUNIT 2)		 4rvo PHENYLACETATE-COENZY
ME A LIGASE
(Bacteroides
thetaiotaomicron) 		3 / 3 CYH A 313
CYH A 251
HIS A 258
 ZN  A 501 (-2.4A)
ZN  A 501 (-2.3A)
ZN  A 501 (-3.2A)
 0.85A 3dtuD-4rvoA:
undetectable		 3dtuD-4rvoA:
19.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3KPD_C_SAMC1000_1
(UNCHARACTERIZED
PROTEIN MJ0100)		 4rvo PHENYLACETATE-COENZY
ME A LIGASE
(Bacteroides
thetaiotaomicron) 		5 / 12 ILE A 361
VAL A 345
ILE A 404
ASN A 339
ILE A 340
 None
None
None
ADP  A 502 ( 2.8A)
None
 1.08A 3kpdC-4rvoA:
undetectable		 3kpdC-4rvoA:
15.70
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3OZW_B_KKKB413_1
(FLAVOHEMOGLOBIN)		 4rvo PHENYLACETATE-COENZY
ME A LIGASE
(Bacteroides
thetaiotaomicron) 		5 / 12 ILE A 126
HIS A 182
ALA A 151
LEU A 154
GLY A 144
 None
UNL  A 506 ( 4.6A)
None
None
None
 1.01A 3ozwB-4rvoA:
2.2		 3ozwB-4rvoA:
20.66
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4M6T_A_SAMA201_0
(RNA POLYMERASE
II-ASSOCIATED FACTOR
1 HOMOLOG, LINKER,
RNA
POLYMERASE-ASSOCIATE
D PROTEIN LEO1)		 4rvo PHENYLACETATE-COENZY
ME A LIGASE
(Bacteroides
thetaiotaomicron) 		4 / 4 ILE A 269
VAL A 266
VAL A 286
ARG A 301
 None
 1.28A 4m6tA-4rvoA:
undetectable		 4m6tA-4rvoA:
18.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4MK4_B_CHDB502_0
(FERROCHELATASE,
MITOCHONDRIAL)		 4rvo PHENYLACETATE-COENZY
ME A LIGASE
(Bacteroides
thetaiotaomicron) 		4 / 6 PHE A 237
MET A 257
ILE A 325
VAL A 266
 ADP  A 502 (-4.7A)
ADP  A 502 ( 4.3A)
ADP  A 502 ( 4.3A)
None
 1.33A 4mk4B-4rvoA:
5.4		 4mk4B-4rvoA:
22.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4P68_A_MTXA201_1
(DIHYDROFOLATE
REDUCTASE)		 4rvo PHENYLACETATE-COENZY
ME A LIGASE
(Bacteroides
thetaiotaomicron) 		5 / 11 ASP A 331
PHE A 333
ILE A 404
ILE A 361
TYR A 359
 None
 1.41A 4p68A-4rvoA:
undetectable		 4p68A-4rvoA:
15.70
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4WOZ_B_MN9B401_0
(N-ACETYLNEURAMINATE
LYASE)		 4rvo PHENYLACETATE-COENZY
ME A LIGASE
(Bacteroides
thetaiotaomicron) 		4 / 6 SER A  55
LEU A  56
ASP A  57
LEU A  23
 None
 0.88A 4wozA-4rvoA:
undetectable
4wozB-4rvoA:
undetectable		 4wozA-4rvoA:
22.49
4wozB-4rvoA:
22.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5EQB_A_1YNA602_1
(LANOSTEROL 14-ALPHA
DEMETHYLASE)		 4rvo PHENYLACETATE-COENZY
ME A LIGASE
(Bacteroides
thetaiotaomicron) 		5 / 12 GLY A 316
ILE A 282
GLY A 283
HIS A 258
THR A 318
 None
None
None
ZN  A 501 (-3.2A)
None
 0.95A 5eqbA-4rvoA:
undetectable		 5eqbA-4rvoA:
21.08
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6BRD_A_RFPA502_1
(RIFAMPIN
MONOOXYGENASE)		 4rvo PHENYLACETATE-COENZY
ME A LIGASE
(Bacteroides
thetaiotaomicron) 		5 / 12 HIS A 217
LEU A 121
VAL A 117
PHE A 132
GLY A 213
 None
None
None
None
ADP  A 502 ( 3.7A)
 1.41A 6brdA-4rvoA:
undetectable		 6brdA-4rvoA:
12.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6BZO_C_FI8C1201_0
(DNA-DIRECTED RNA
POLYMERASE SUBUNIT
BETA)		 4rvo PHENYLACETATE-COENZY
ME A LIGASE
(Bacteroides
thetaiotaomicron) 		5 / 12 ILE A 225
VAL A 159
SER A 166
VAL A 194
GLU A 193
 None
None
SO4  A 508 (-2.6A)
None
None
 1.29A 6bzoC-4rvoA:
undetectable		 6bzoC-4rvoA:
17.49