SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '4xvs'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID		 Hit
Macromolecule		 Res.
Matches		 Interface HETATM RMSD Dali
Z-score		 Seq.
Identity (%)		 View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1HPK_A_ACAA80_1
(PLASMINOGEN)		 4xvs DONOR 45 01DG5 COREE
GP120
VRC07_1995
45-VRC01.H01+07.O-86
3513/45-VRC01.L01+07
.O-110653 HEAVY
CHAIN
(Homo
sapiens;
Human
immunodeficiency
virus
1) 		4 / 6 PRO H  33
ASP G 279
ASN G 276
TRP H 110
 None
 1.44A 1hpkA-4xvsH:
undetectable		 1hpkA-4xvsH:
16.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1LIN_A_TFPA154_1
(CALMODULIN)		 4xvs VRC07_1995
45-VRC01.H01+07.O-86
3513/45-VRC01.L01+07
.O-110653 HEAVY
CHAIN
(Homo
sapiens) 		4 / 7 LEU H  86
MET H  83
LEU H  81
MET H  48
 None
 1.10A 1linA-4xvsH:
undetectable		 1linA-4xvsH:
18.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1S3Z_B_RIOB501_0
(AMINOGLYCOSIDE
6'-N-ACETYLTRANSFERA
SE)		 4xvs DONOR 45 01DG5 COREE
GP120
(Human
immunodeficiency
virus
1) 		4 / 8 GLU G  83
VAL G  85
HIS G 249
GLU G 267
 None
 1.30A 1s3zA-4xvsG:
undetectable
1s3zB-4xvsG:
undetectable		 1s3zA-4xvsG:
16.31
1s3zB-4xvsG:
16.31
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3HUO_A_PNNA302_0
(CTX-M-9
EXTENDED-SPECTRUM
BETA-LACTAMASE)		 4xvs VRC07_1995
45-VRC01.H01+07.O-86
3513/45-VRC01.L01+07
.O-110653 HEAVY
CHAIN
(Homo
sapiens) 		4 / 6 LEU H 201
GLY H 202
ALA H 137
PRO H 138
 None
 0.45A 3huoA-4xvsH:
undetectable		 3huoA-4xvsH:
22.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4K39_A_SAMA504_0
(ANAEROBIC
SULFATASE-MATURATING
ENZYME)		 4xvs DONOR 45 01DG5 COREE
GP120
(Human
immunodeficiency
virus
1) 		5 / 12 PHE G 391
ASN G 332
VAL G 292
ILE G 449
LEU G 452
 None
NAG  G 602 (-4.0A)
None
None
None
 1.42A 4k39A-4xvsG:
undetectable		 4k39A-4xvsG:
19.39
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4LAJ_B_ACAB512_1
(HIV-1 YU2 GP120
ENVELOPE
GLYCOPROTEIN)		 4xvs DONOR 45 01DG5 COREE
GP120
(Human
immunodeficiency
virus
1) 		4 / 6 ASP G  57
PRO G 214
HIS G 216
ARG G 252
 None
None
None
NAG  G 605 (-3.9A)
 0.60A 4lajA-4xvsG:
49.9
4lajB-4xvsG:
50.4		 4lajA-4xvsG:
89.14
4lajB-4xvsG:
89.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5B6I_A_ADNA302_1
(FLUORINASE)		 4xvs DONOR 45 01DG5 COREE
GP120
VRC07_1995
45-VRC01.H01+07.O-86
3513/45-VRC01.L01+07
.O-110653 HEAVY
CHAIN
(Homo
sapiens;
Human
immunodeficiency
virus
1) 		4 / 7 ASP G 457
TYR H  60
PRO H  61
SER G 365
 None
 0.94A 5b6iA-4xvsG:
undetectable		 5b6iA-4xvsG:
19.31
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5BXN_H_BO2H301_1
(PROTEASOME SUBUNIT
BETA TYPE-2
PROTEASOME SUBUNIT
BETA TYPE-3)		 4xvs VRC07_1995
45-VRC01.H01+07.O-86
3513/45-VRC01.L01+07
.O-110653 HEAVY
CHAIN
(Homo
sapiens) 		5 / 11 SER H 200
GLY H 146
THR H 147
ALA H 148
THR H 143
 None
 0.89A 5bxnH-4xvsH:
undetectable
5bxnI-4xvsH:
undetectable		 5bxnH-4xvsH:
22.39
5bxnI-4xvsH:
22.86
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5DBY_A_ACTA610_0
(SERUM ALBUMIN)		 4xvs DONOR 45 01DG5 COREE
GP120
(Human
immunodeficiency
virus
1) 		3 / 3 TYR G 487
LYS G 486
LYS G 227
 None
 1.31A 5dbyA-4xvsG:
undetectable		 5dbyA-4xvsG:
18.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5EU8_B_010B6_0
(N-[(5-METHYLISOXAZOL
-3-YL)CARBONYL]ALANY
L-L-VALYL-N~1~-((1R,
2Z)-4-(BENZYLOXY)-4-
OXO-1-{[(3R)-2-OXOPY
RROLIDIN-3-YL]METHYL
}BUT-2-ENYL)-L-LEUCI
NAMIDE
MAIN PROTEASE)		 4xvs DONOR 45 01DG5 COREE
GP120
(Human
immunodeficiency
virus
1) 		4 / 5 ASN G 386
LEU G 416
HIS G 374
CYH G 331
 NAG  G 607 (-1.8A)
None
None
None
 1.24A 5eu8A-4xvsG:
undetectable		 5eu8A-4xvsG:
19.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6HWD_H_BO2H301_0
(PROTEASOME SUBUNIT
BETA TYPE-2
PROTEASOME SUBUNIT
BETA TYPE-3)		 4xvs VRC07_1995
45-VRC01.H01+07.O-86
3513/45-VRC01.L01+07
.O-110653 HEAVY
CHAIN
(Homo
sapiens) 		5 / 12 SER H 200
GLY H 146
THR H 147
ALA H 148
THR H 143
 None
 0.99A 6hwdH-4xvsH:
undetectable
6hwdI-4xvsH:
undetectable		 6hwdH-4xvsH:
19.40
6hwdI-4xvsH:
16.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6HWD_V_BO2V301_0
(PROTEASOME SUBUNIT
BETA TYPE-2)		 4xvs VRC07_1995
45-VRC01.H01+07.O-86
3513/45-VRC01.L01+07
.O-110653 HEAVY
CHAIN
(Homo
sapiens) 		5 / 11 SER H 200
GLY H 146
THR H 147
ALA H 148
THR H 143
 None
 0.99A 6hwdV-4xvsH:
undetectable		 6hwdV-4xvsH:
19.40