SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '5ikb'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1HRK_A_CHDA1501_0
(FERROCHELATASE)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
5 / 12 PHE A 105
LEU A  43
MET A  39
ILE A  91
LEU A   6
None
1.17A 1hrkA-5ikbA:
undetectable
1hrkA-5ikbA:
23.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1L5Q_B_CFFB1864_1
(GLYCOGEN
PHOSPHORYLASE, LIVER
FORM)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
3 / 3 TRP A 158
HIS A 138
MET A 143
None
1.16A 1l5qB-5ikbA:
undetectable
1l5qB-5ikbA:
16.19
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1LBC_A_CYZA330_1
(GLUTAMINE RECEPTOR 2)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
6 / 12 LYS A 103
PRO A 104
MET A 106
LEU A 235
LEU A 243
LYS A 247
None
0.84A 1lbcA-5ikbA:
36.9
1lbcC-5ikbA:
36.8
1lbcA-5ikbA:
55.73
1lbcC-5ikbA:
55.73
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1LBC_B_CYZB329_1
(GLUTAMINE RECEPTOR 2)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
6 / 9 LYS A 103
PRO A 104
MET A 106
LEU A 235
LEU A 243
LYS A 247
None
0.95A 1lbcB-5ikbA:
36.4
1lbcB-5ikbA:
55.73
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1LBC_C_CYZC331_1
(GLUTAMINE RECEPTOR 2)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
6 / 12 LYS A 103
PRO A 104
MET A 106
LEU A 235
LEU A 243
LYS A 247
None
0.88A 1lbcA-5ikbA:
36.9
1lbcC-5ikbA:
36.8
1lbcA-5ikbA:
55.73
1lbcC-5ikbA:
55.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1QZR_B_CDXB901_1
(DNA TOPOISOMERASE II)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
4 / 7 THR A   9
ASN A  29
TYR A  32
LEU A  17
None
1.03A 1qzrA-5ikbA:
undetectable
1qzrA-5ikbA:
19.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1QZR_B_CDXB901_2
(DNA TOPOISOMERASE II)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
4 / 7 THR A   9
ASN A  29
TYR A  32
LEU A  17
None
1.08A 1qzrB-5ikbA:
undetectable
1qzrB-5ikbA:
19.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2AVO_B_MK1B902_1
(POL POLYPROTEIN)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
5 / 9 LEU A 235
ASP A 231
GLY A 217
ILE A  91
ILE A 234
None
1.00A 2avoA-5ikbA:
undetectable
2avoA-5ikbA:
20.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2W98_A_P1ZA1353_1
(PROSTAGLANDIN
REDUCTASE 2)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
5 / 9 VAL A  60
GLY A 140
MET A 143
PHE A 169
ILE A 137
None
KAI  A 301 (-3.6A)
None
None
KAI  A 301 (-3.9A)
1.24A 2w98A-5ikbA:
undetectable
2w98A-5ikbA:
21.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3DOU_A_SAMA1_0
(RIBOSOMAL RNA LARGE
SUBUNIT
METHYLTRANSFERASE J)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
5 / 12 SER A 142
GLY A 140
GLY A 139
LEU A 211
ILE A 112
KAI  A 301 (-2.6A)
KAI  A 301 (-3.6A)
GOL  A 302 (-4.3A)
None
None
0.95A 3douA-5ikbA:
undetectable
3douA-5ikbA:
21.85
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3H6T_A_CYZA265_1
(GLUTAMATE RECEPTOR 2)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
5 / 11 PRO A 104
MET A 106
LEU A 235
LEU A 243
LYS A 247
None
0.37A 3h6tA-5ikbA:
36.7
3h6tC-5ikbA:
36.7
3h6tA-5ikbA:
55.73
3h6tC-5ikbA:
55.73
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3H6T_B_CYZB265_1
(GLUTAMATE RECEPTOR 2)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
6 / 9 LYS A 103
PRO A 104
MET A 106
LEU A 235
LEU A 243
LYS A 247
None
0.88A 3h6tB-5ikbA:
36.4
3h6tB-5ikbA:
55.73
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3H6T_C_CYZC265_1
(GLUTAMATE RECEPTOR 2)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
6 / 11 LYS A 103
PRO A 104
MET A 106
LEU A 235
LEU A 243
LYS A 247
None
0.81A 3h6tA-5ikbA:
36.7
3h6tC-5ikbA:
36.7
3h6tA-5ikbA:
55.73
3h6tC-5ikbA:
55.73
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3ILT_B_TRUB800_1
(GLUTAMATE RECEPTOR 2)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
5 / 12 LYS A 103
PRO A 104
MET A 106
LEU A 235
LEU A 243
None
0.94A 3iltB-5ikbA:
32.6
3iltE-5ikbA:
32.2
3iltB-5ikbA:
54.41
3iltE-5ikbA:
54.41
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3ILT_B_TRUB800_1
(GLUTAMATE RECEPTOR 2)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
5 / 12 LYS A 103
PRO A 104
MET A 106
LEU A 243
LYS A 247
None
0.96A 3iltB-5ikbA:
32.6
3iltE-5ikbA:
32.2
3iltB-5ikbA:
54.41
3iltE-5ikbA:
54.41
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3ILT_E_TRUE800_1
(GLUTAMATE RECEPTOR 2)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
6 / 10 LYS A 103
PRO A 104
MET A 106
LEU A 235
LEU A 243
LYS A 247
None
0.87A 3iltB-5ikbA:
32.6
3iltE-5ikbA:
32.2
3iltB-5ikbA:
54.41
3iltE-5ikbA:
54.41
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3LSF_H_PZIH800_0
(GLUTAMATE RECEPTOR 2)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
4 / 8 PRO A 104
MET A 106
LEU A 243
LYS A 247
None
0.34A 3lsfH-5ikbA:
36.3
3lsfH-5ikbA:
54.41
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3TKD_A_CYZA266_1
(GLUTAMATE RECEPTOR 2)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
6 / 9 LYS A 103
PRO A 104
MET A 106
LEU A 235
LEU A 243
LYS A 247
None
0.85A 3tkdA-5ikbA:
36.6
3tkdA-5ikbA:
55.73
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3TKD_A_CYZA266_2
(GLUTAMATE RECEPTOR 2)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
4 / 5 ILE A  91
PRO A 104
LYS A 214
GLY A 215
None
0.39A 3tkdB-5ikbA:
36.7
3tkdB-5ikbA:
55.73
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3TKD_B_CYZB267_1
(GLUTAMATE RECEPTOR 2)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
4 / 5 ILE A  91
PRO A 104
LYS A 214
GLY A 215
None
0.37A 3tkdA-5ikbA:
36.6
3tkdA-5ikbA:
55.73
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3TKD_B_CYZB267_2
(GLUTAMATE RECEPTOR 2)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
5 / 9 LYS A 103
PRO A 104
MET A 106
LEU A 243
LYS A 247
None
0.88A 3tkdB-5ikbA:
36.7
3tkdB-5ikbA:
55.73
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3TKD_B_CYZB267_2
(GLUTAMATE RECEPTOR 2)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
5 / 9 PRO A 104
MET A 106
LEU A 235
LEU A 243
LYS A 247
None
0.51A 3tkdB-5ikbA:
36.7
3tkdB-5ikbA:
55.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4E1G_A_LNLA701_1
(PROSTAGLANDIN G/H
SYNTHASE 2)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
5 / 12 PHE A  49
ILE A 234
GLY A 219
ALA A  85
LEU A  40
None
1.05A 4e1gA-5ikbA:
undetectable
4e1gA-5ikbA:
19.86
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4E1G_B_LNLB701_1
(PROSTAGLANDIN G/H
SYNTHASE 2)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
5 / 12 PHE A  49
ILE A 234
GLY A 219
ALA A  85
LEU A  40
None
1.05A 4e1gB-5ikbA:
undetectable
4e1gB-5ikbA:
19.86
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4LNX_A_T3A502_2
(THYROID HORMONE
RECEPTOR ALPHA)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
3 / 3 ILE A 120
MET A 157
ARG A 156
None
0.94A 4lnxA-5ikbA:
undetectable
4lnxA-5ikbA:
19.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4NJU_A_TPVA500_2
(PROTEASE)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
5 / 10 LEU A 235
ASP A 231
GLY A 217
ILE A  91
ILE A 234
None
1.08A 4njuB-5ikbA:
undetectable
4njuB-5ikbA:
20.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4NJU_C_TPVC500_2
(PROTEASE)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
5 / 10 LEU A 235
ASP A 231
GLY A 217
ILE A  91
ILE A 234
None
1.08A 4njuD-5ikbA:
undetectable
4njuD-5ikbA:
20.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4X1F_A_3WFA501_1
(NUCLEAR RECEPTOR
SUBFAMILY 1 GROUP I
MEMBER 2)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
5 / 12 LEU A 181
SER A 183
LEU A 204
SER A 111
ILE A 177
None
1.09A 4x1fA-5ikbA:
undetectable
4x1fA-5ikbA:
19.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4X1G_A_3WFA501_1
(NUCLEAR RECEPTOR
SUBFAMILY 1 GROUP I
MEMBER 2)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
5 / 12 LEU A 181
SER A 183
LEU A 204
SER A 111
ILE A 177
None
1.07A 4x1gA-5ikbA:
undetectable
4x1gA-5ikbA:
19.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4XUM_B_IMNB501_1
(PEROXISOME
PROLIFERATOR-ACTIVAT
ED RECEPTOR GAMMA)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
5 / 11 GLY A 219
SER A 102
ILE A 234
LEU A  43
LEU A  47
None
1.18A 4xumB-5ikbA:
undetectable
4xumB-5ikbA:
21.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5JHD_E_EDTE301_0
(BETA-2-MICROGLOBULIN
TCRBETA CHAIN)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
4 / 8 SER A 141
THR A  90
THR A  92
ILE A 110
KAI  A 301 ( 3.3A)
KAI  A 301 (-3.9A)
GOL  A 302 (-3.0A)
None
1.02A 5jhdE-5ikbA:
undetectable
5jhdG-5ikbA:
undetectable
5jhdE-5ikbA:
21.74
5jhdG-5ikbA:
15.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5KKZ_O_ASCO1004_0
(CYTOCHROME B
UBIQUINOL-CYTOCHROME
C REDUCTASE
IRON-SULFUR SUBUNIT)
5ikb GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4,GLUTAMATE RECEPTOR
IONOTROPIC, KAINATE
4

(Rattus
norvegicus)
4 / 7 HIS A 138
ILE A 137
TYR A 185
ARG A 179
None
KAI  A 301 (-3.9A)
None
None
1.15A 5kkzM-5ikbA:
undetectable
5kkzO-5ikbA:
undetectable
5kkzM-5ikbA:
19.70
5kkzO-5ikbA:
20.09