SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '5j5p'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1AJ6_A_NOVA1_1
(GYRASE)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
5 / 9 ASN A  51
ASP A  78
ARG A 140
ILE A  98
THR A 172
MG  A 503 ( 2.5A)
ANP  A 501 (-2.6A)
None
ANP  A 501 ( 3.4A)
ANP  A 501 (-3.5A)
1.45A 1aj6A-5j5pA:
27.9
1aj6A-5j5pA:
32.76
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1AJ6_A_NOVA1_1
(GYRASE)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
7 / 9 ASN A  51
GLU A  55
ASP A  78
ARG A  81
PRO A  84
ILE A  98
THR A 172
MG  A 503 ( 2.5A)
ANP  A 501 (-3.2A)
ANP  A 501 (-2.6A)
None
None
ANP  A 501 ( 3.4A)
ANP  A 501 (-3.5A)
0.73A 1aj6A-5j5pA:
27.9
1aj6A-5j5pA:
32.76
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1KIJ_A_NOVA400_1
(DNA GYRASE SUBUNIT B)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
8 / 12 ASP A  54
GLU A  55
ASP A  78
ARG A  81
PRO A  84
ILE A  98
ARG A 140
THR A 172
None
ANP  A 501 (-3.2A)
ANP  A 501 (-2.6A)
None
None
ANP  A 501 ( 3.4A)
None
ANP  A 501 (-3.5A)
0.62A 1kijA-5j5pA:
45.6
1kijA-5j5pA:
46.53
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1KIJ_B_NOVB444_1
(DNA GYRASE SUBUNIT B)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
8 / 12 ASN A  51
GLU A  55
ASP A  78
ARG A  81
PRO A  84
ILE A  98
ARG A 140
THR A 172
MG  A 503 ( 2.5A)
ANP  A 501 (-3.2A)
ANP  A 501 (-2.6A)
None
None
ANP  A 501 ( 3.4A)
None
ANP  A 501 (-3.5A)
0.71A 1kijB-5j5pA:
46.0
1kijB-5j5pA:
46.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1S14_A_NOVA1300_1
(TOPOISOMERASE IV
SUBUNIT B)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
10 / 12 ASN A  51
ASP A  54
GLU A  55
ASP A  78
ARG A  81
MET A  83
PRO A  84
ILE A  98
ARG A 140
THR A 172
MG  A 503 ( 2.5A)
None
ANP  A 501 (-3.2A)
ANP  A 501 (-2.6A)
None
ANP  A 501 (-4.7A)
None
ANP  A 501 ( 3.4A)
None
ANP  A 501 (-3.5A)
0.56A 1s14A-5j5pA:
24.8
1s14A-5j5pA:
26.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1S14_B_NOVB2300_1
(TOPOISOMERASE IV
SUBUNIT B)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
9 / 12 ASN A  51
ASP A  54
GLU A  55
ASP A  78
ARG A  81
MET A  83
PRO A  84
ILE A  98
ARG A 140
MG  A 503 ( 2.5A)
None
ANP  A 501 (-3.2A)
ANP  A 501 (-2.6A)
None
ANP  A 501 (-4.7A)
None
ANP  A 501 ( 3.4A)
None
0.55A 1s14B-5j5pA:
26.8
1s14B-5j5pA:
26.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1YKI_A_NFZA1219_1
(OXYGEN-INSENSITIVE
NAD(P)H
NITROREDUCTASE)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
4 / 8 TYR A 263
ASN A 264
LYS A 239
GLY A 323
None
1.04A 1ykiA-5j5pA:
undetectable
1ykiB-5j5pA:
undetectable
1ykiA-5j5pA:
19.90
1ykiB-5j5pA:
19.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1YKI_C_NFZC3219_1
(OXYGEN-INSENSITIVE
NAD(P)H
NITROREDUCTASE)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
4 / 8 TYR A 263
ASN A 264
LYS A 239
GLY A 323
None
1.05A 1ykiC-5j5pA:
undetectable
1ykiD-5j5pA:
undetectable
1ykiC-5j5pA:
19.90
1ykiD-5j5pA:
19.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1YKI_D_NFZD4219_1
(OXYGEN-INSENSITIVE
NAD(P)H
NITROREDUCTASE)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
4 / 8 TYR A 263
ASN A 264
LYS A 239
GLY A 323
None
1.03A 1ykiC-5j5pA:
undetectable
1ykiD-5j5pA:
undetectable
1ykiC-5j5pA:
19.90
1ykiD-5j5pA:
19.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ZGY_A_BRLA503_2
(PEROXISOME
PROLIFERATOR
ACTIVATED RECEPTOR
GAMMA)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
4 / 5 ILE A 101
ILE A 138
MET A  90
LEU A 134
None
0.83A 1zgyA-5j5pA:
undetectable
1zgyA-5j5pA:
19.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2V0M_C_KLNC1499_1
(CYTOCHROME P450 3A4)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
4 / 7 PHE A 339
LEU A  57
ILE A  64
GLY A 117
None
0.95A 2v0mC-5j5pA:
undetectable
2v0mC-5j5pA:
23.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3BC9_A_ACRA901_1
(ALPHA AMYLASE,
CATALYTIC REGION)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
4 / 7 ASP A  37
SER A  35
GLU A  47
ASP A  50
None
None
ANP  A 501 (-4.4A)
None
1.26A 3bc9A-5j5pA:
undetectable
3bc9A-5j5pA:
22.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3CLD_B_GW6B2_2
(GLUCOCORTICOID
RECEPTOR)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
4 / 8 LEU A 290
ALA A 325
LEU A 324
ILE A 330
None
0.91A 3cldB-5j5pA:
undetectable
3cldB-5j5pA:
19.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3GV1_B_BEZB303_0
(DISULFIDE
INTERCHANGE PROTEIN)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
4 / 4 LEU A  44
ALA A 129
VAL A  25
PRO A  29
None
1.14A 3gv1B-5j5pA:
undetectable
3gv1B-5j5pA:
17.11
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3LPS_A_NOVA901_1
(TOPOISOMERASE IV
SUBUNIT B)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
10 / 12 ASN A  51
ASP A  54
GLU A  55
ASP A  78
ARG A  81
MET A  83
PRO A  84
ILE A  98
ARG A 140
THR A 172
MG  A 503 ( 2.5A)
None
ANP  A 501 (-3.2A)
ANP  A 501 (-2.6A)
None
ANP  A 501 (-4.7A)
None
ANP  A 501 ( 3.4A)
None
ANP  A 501 (-3.5A)
0.58A 3lpsA-5j5pA:
39.0
3lpsA-5j5pA:
36.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3P50_A_PFLA319_1
(GLR4197 PROTEIN)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
4 / 7 PRO A 155
ILE A  92
THR A 100
ILE A 101
None
0.92A 3p50A-5j5pA:
undetectable
3p50A-5j5pA:
21.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3P50_B_PFLB319_1
(GLR4197 PROTEIN)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
4 / 7 PRO A 155
ILE A  92
THR A 100
ILE A 101
None
0.93A 3p50B-5j5pA:
undetectable
3p50B-5j5pA:
21.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3P50_C_PFLC319_1
(GLR4197 PROTEIN)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
4 / 7 PRO A 155
ILE A  92
THR A 100
ILE A 101
None
0.93A 3p50C-5j5pA:
undetectable
3p50C-5j5pA:
21.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3P50_D_PFLD320_1
(GLR4197 PROTEIN)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
4 / 7 PRO A 155
ILE A  92
THR A 100
ILE A 101
None
0.91A 3p50D-5j5pA:
undetectable
3p50D-5j5pA:
21.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3P50_E_PFLE319_1
(GLR4197 PROTEIN)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
4 / 7 PRO A 155
ILE A  92
THR A 100
ILE A 101
None
0.96A 3p50E-5j5pA:
undetectable
3p50E-5j5pA:
21.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3W9T_E_W9TE506_1
(HEMOLYTIC LECTIN
CEL-III)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
4 / 6 THR A 115
ASN A 276
GLY A 117
ASP A  54
None
1.35A 3w9tE-5j5pA:
undetectable
3w9tE-5j5pA:
20.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4F93_B_SANB3004_1
(U5 SMALL NUCLEAR
RIBONUCLEOPROTEIN
200 KDA HELICASE)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
4 / 8 GLU A  55
GLU A 334
GLN A 110
GLY A 111
ANP  A 501 (-3.2A)
None
None
None
0.93A 4f93B-5j5pA:
undetectable
4f93B-5j5pA:
12.80
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URN_A_NOVA2000_1
(DNA TOPOISOMERASE
IV, B SUBUNIT)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
9 / 11 ASN A  51
ASP A  54
GLU A  55
ASP A  78
ARG A  81
MET A  83
PRO A  84
ARG A 140
THR A 172
MG  A 503 ( 2.5A)
None
ANP  A 501 (-3.2A)
ANP  A 501 (-2.6A)
None
ANP  A 501 (-4.7A)
None
None
ANP  A 501 (-3.5A)
0.92A 4urnA-5j5pA:
30.3
4urnA-5j5pA:
40.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URN_A_NOVA2000_1
(DNA TOPOISOMERASE
IV, B SUBUNIT)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
8 / 11 ASN A  51
ASP A  54
GLU A  55
ASP A  78
ARG A  81
PRO A  84
ILE A  98
THR A 172
MG  A 503 ( 2.5A)
None
ANP  A 501 (-3.2A)
ANP  A 501 (-2.6A)
None
None
ANP  A 501 ( 3.4A)
ANP  A 501 (-3.5A)
1.11A 4urnA-5j5pA:
30.3
4urnA-5j5pA:
40.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URN_B_NOVB2000_1
(DNA TOPOISOMERASE
IV, B SUBUNIT)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
9 / 11 ASN A  51
ASP A  54
GLU A  55
ASP A  78
ARG A  81
MET A  83
PRO A  84
ARG A 140
THR A 172
MG  A 503 ( 2.5A)
None
ANP  A 501 (-3.2A)
ANP  A 501 (-2.6A)
None
ANP  A 501 (-4.7A)
None
None
ANP  A 501 (-3.5A)
0.82A 4urnB-5j5pA:
27.7
4urnB-5j5pA:
40.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URN_B_NOVB2000_1
(DNA TOPOISOMERASE
IV, B SUBUNIT)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
8 / 11 ASN A  51
ASP A  54
GLU A  55
ASP A  78
ARG A  81
PRO A  84
ILE A  98
ARG A 140
MG  A 503 ( 2.5A)
None
ANP  A 501 (-3.2A)
ANP  A 501 (-2.6A)
None
None
ANP  A 501 ( 3.4A)
None
0.99A 4urnB-5j5pA:
27.7
4urnB-5j5pA:
40.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URN_C_NOVC2000_1
(DNA TOPOISOMERASE
IV, B SUBUNIT)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
9 / 11 ASN A  51
ASP A  54
GLU A  55
ASP A  78
ARG A  81
MET A  83
PRO A  84
ARG A 140
THR A 172
MG  A 503 ( 2.5A)
None
ANP  A 501 (-3.2A)
ANP  A 501 (-2.6A)
None
ANP  A 501 (-4.7A)
None
None
ANP  A 501 (-3.5A)
0.83A 4urnC-5j5pA:
30.2
4urnC-5j5pA:
40.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URN_C_NOVC2000_1
(DNA TOPOISOMERASE
IV, B SUBUNIT)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
9 / 11 ASN A  51
ASP A  54
GLU A  55
ASP A  78
ARG A  81
PRO A  84
ILE A  98
ARG A 140
THR A 172
MG  A 503 ( 2.5A)
None
ANP  A 501 (-3.2A)
ANP  A 501 (-2.6A)
None
None
ANP  A 501 ( 3.4A)
None
ANP  A 501 (-3.5A)
0.92A 4urnC-5j5pA:
30.2
4urnC-5j5pA:
40.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URO_A_NOVA2000_1
(DNA GYRASE SUBUNIT B)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
8 / 12 ASN A  51
GLU A  55
ASP A  78
ARG A  81
PRO A  84
ILE A  98
SER A 124
ARG A 140
MG  A 503 ( 2.5A)
ANP  A 501 (-3.2A)
ANP  A 501 (-2.6A)
None
None
ANP  A 501 ( 3.4A)
ANP  A 501 (-3.2A)
None
0.76A 4uroA-5j5pA:
28.7
4uroA-5j5pA:
40.18
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URO_B_NOVB2000_1
(DNA GYRASE SUBUNIT B)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
8 / 12 ASN A  51
GLU A  55
ASP A  78
ARG A  81
PRO A  84
ILE A  98
SER A 124
ARG A 140
MG  A 503 ( 2.5A)
ANP  A 501 (-3.2A)
ANP  A 501 (-2.6A)
None
None
ANP  A 501 ( 3.4A)
ANP  A 501 (-3.2A)
None
0.87A 4uroB-5j5pA:
28.5
4uroB-5j5pA:
40.18
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URO_C_NOVC2000_1
(DNA GYRASE SUBUNIT B)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
8 / 12 ASN A  51
GLU A  55
ASP A  78
ARG A  81
PRO A  84
ILE A  98
SER A 124
ARG A 140
MG  A 503 ( 2.5A)
ANP  A 501 (-3.2A)
ANP  A 501 (-2.6A)
None
None
ANP  A 501 ( 3.4A)
ANP  A 501 (-3.2A)
None
0.78A 4uroC-5j5pA:
28.8
4uroC-5j5pA:
40.18
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URO_D_NOVD2000_1
(DNA GYRASE SUBUNIT B)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
6 / 12 ASN A  51
ASP A  78
ARG A 140
ILE A  98
SER A 124
THR A 172
MG  A 503 ( 2.5A)
ANP  A 501 (-2.6A)
None
ANP  A 501 ( 3.4A)
ANP  A 501 (-3.2A)
ANP  A 501 (-3.5A)
1.43A 4uroD-5j5pA:
28.4
4uroD-5j5pA:
40.18
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4URO_D_NOVD2000_1
(DNA GYRASE SUBUNIT B)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
9 / 12 ASN A  51
GLU A  55
ASP A  78
ARG A  81
PRO A  84
ILE A  98
SER A 124
ARG A 140
THR A 172
MG  A 503 ( 2.5A)
ANP  A 501 (-3.2A)
ANP  A 501 (-2.6A)
None
None
ANP  A 501 ( 3.4A)
ANP  A 501 (-3.2A)
None
ANP  A 501 (-3.5A)
0.76A 4uroD-5j5pA:
28.4
4uroD-5j5pA:
40.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5EWU_A_BEZA1401_0
(MAGNESIUM-CHELATASE
SUBUNIT CHLH,
CHLOROPLASTIC)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
4 / 6 GLY A 123
SER A 125
VAL A 126
HIS A 103
ANP  A 501 (-3.4A)
NA  A 502 (-3.0A)
None
None
1.02A 5ewuA-5j5pA:
undetectable
5ewuA-5j5pA:
24.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5EWU_B_BEZB1401_0
(MAGNESIUM-CHELATASE
SUBUNIT CHLH,
CHLOROPLASTIC)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
4 / 6 GLY A 123
SER A 125
VAL A 126
HIS A 103
ANP  A 501 (-3.4A)
NA  A 502 (-3.0A)
None
None
1.06A 5ewuB-5j5pA:
undetectable
5ewuB-5j5pA:
24.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6MA7_A_TPFA602_0
(CYTOCHROME P450 3A4)
5j5p DNA TOPOISOMERASE 4
SUBUNIT B

(Streptococcus
pneumoniae)
4 / 7 ARG A 386
ALA A 388
ILE A 383
ALA A 382
None
0.97A 6ma7A-5j5pA:
undetectable
6ma7A-5j5pA:
13.07