SIMILAR PATTERN OF AMINO ACIDS MAPPED TO '5m5x'

List of Similar Pattern of Amino Acids

Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click on the DrReposER ID to view details on interfaces and similar patterns of amino acids)
(Click on the view link on the last column to view superposed patterns of amino acids)
Filter list by:
DrReposER ID / Desc. Hit
PDBID
Hit
Macromolecule
Res.
Matches
Interface HETATM RMSD Dali
Z-score
Seq.
Identity (%)
View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1I00_A_D16A315_1
(THYMIDYLATE SYNTHASE)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
5 / 9 ASP B 841
LEU B 845
GLY B 844
PHE B 825
TYR B 847
None
1.32A 1i00A-5m5xB:
undetectable
1i00A-5m5xB:
12.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1I00_B_D16B409_1
(THYMIDYLATE SYNTHASE)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
5 / 9 ASP B 841
LEU B 845
GLY B 844
PHE B 825
TYR B 847
None
1.36A 1i00B-5m5xB:
undetectable
1i00B-5m5xB:
12.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1S8F_A_BEZA1502_0
(RAS-RELATED PROTEIN
RAB-9A)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
4 / 4 HIS B 251
ILE B 217
GLN B 235
PHE B 222
None
1.44A 1s8fA-5m5xB:
0.0
1s8fB-5m5xB:
0.0
1s8fA-5m5xB:
10.12
1s8fB-5m5xB:
10.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2A7Q_A_CFBA328_2
(DEOXYCYTIDINE KINASE)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
4 / 4 ILE B 907
ASP B 738
LEU B 733
ARG B 909
None
1.22A 2a7qA-5m5xB:
undetectable
2a7qA-5m5xB:
11.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2J9D_A_ACTA1117_0
(HYPOTHETICAL
NITROGEN REGULATORY
PII-LIKE PROTEIN
MJ0059)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
3 / 3 ASP B 442
ARG B 448
ARG B 444
None
0.71A 2j9dA-5m5xB:
undetectable
2j9dC-5m5xB:
undetectable
2j9dA-5m5xB:
7.90
2j9dC-5m5xB:
7.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2TSR_C_D16C509_1
(THYMIDYLATE SYNTHASE)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
5 / 10 ASP B 841
LEU B 845
GLY B 844
PHE B 825
TYR B 847
None
1.30A 2tsrC-5m5xB:
undetectable
2tsrC-5m5xB:
13.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2TSR_D_D16D609_1
(THYMIDYLATE SYNTHASE)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
5 / 9 ASP B 841
LEU B 845
GLY B 844
PHE B 825
TYR B 847
None
1.35A 2tsrD-5m5xB:
undetectable
2tsrD-5m5xB:
13.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2VAV_F_CSCF1383_2
(ACETYL-COA--DEACETYL
CEPHALOSPORIN C
ACETYLTRANSFERASE)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
3 / 3 LEU B 404
MET B 205
MET B 461
None
0.72A 2vavF-5m5xB:
undetectable
2vavF-5m5xB:
18.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2Y7K_B_SALB1305_1
(LYSR-TYPE REGULATORY
PROTEIN)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
4 / 5 ARG B 379
PRO B 581
GLY B 580
TRP B 595
None
1.37A 2y7kB-5m5xB:
undetectable
2y7kB-5m5xB:
10.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2Y7P_A_SALA1001_1
(LYSR-TYPE REGULATORY
PROTEIN)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
4 / 6 ARG B 379
PRO B 581
GLY B 580
TRP B 595
None
1.48A 2y7pA-5m5xB:
undetectable
2y7pA-5m5xB:
10.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ZJ0_D_2FAD500_2
(ADENOSYLHOMOCYSTEINA
SE)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
4 / 4 LEU B 744
GLN B 748
THR B 746
THR B 725
None
1.26A 2zj0D-5m5xB:
undetectable
2zj0D-5m5xB:
16.78
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3LTW_A_HLZA300_1
(ARYLAMINE
N-ACETYLTRANSFERASE
NAT)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
4 / 6 PHE B 986
TYR B 995
VAL B 752
PHE B 996
None
1.27A 3ltwA-5m5xB:
undetectable
3ltwA-5m5xB:
11.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3NK2_X_LDPX433_1
(6-HYDROXY-L-NICOTINE
OXIDASE)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
4 / 7 MET B 762
LEU B 703
LEU B  38
PHE B 765
None
1.32A 3nk2X-5m5xB:
undetectable
3nk2X-5m5xB:
15.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3UJ7_A_SAMA301_0
(PHOSPHOETHANOLAMINE
N-METHYLTRANSFERASE)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
5 / 12 ILE B1151
ILE B1153
ARG B1134
ASP B1137
ALA B1138
None
1.26A 3uj7A-5m5xB:
undetectable
3uj7A-5m5xB:
12.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3V4T_D_ACTD502_0
(UDP-N-ACETYLGLUCOSAM
INE
1-CARBOXYVINYLTRANSF
ERASE)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
3 / 3 GLY B 727
THR B 725
ASN B 767
None
0.70A 3v4tD-5m5xB:
undetectable
3v4tD-5m5xB:
16.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4EB4_C_D16C402_1
(THYMIDYLATE SYNTHASE)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
5 / 9 ASP B 841
LEU B 845
GLY B 844
PHE B 825
TYR B 847
None
1.32A 4eb4C-5m5xB:
undetectable
4eb4C-5m5xB:
13.83
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4EB4_D_D16D402_1
(THYMIDYLATE SYNTHASE)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
5 / 10 ASP B 841
LEU B 845
GLY B 844
PHE B 825
TYR B 847
None
1.37A 4eb4D-5m5xB:
undetectable
4eb4D-5m5xB:
13.83
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4OKB_A_198A1002_2
(ANDROGEN RECEPTOR)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
4 / 6 LEU B  61
ASN B  62
LEU B 137
VAL B 155
None
1.02A 4okbA-5m5xB:
undetectable
4okbA-5m5xB:
12.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4PCU_A_SAMA603_0
(CYSTATHIONINE
BETA-SYNTHASE)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
4 / 7 ASP B 946
PRO B 932
ILE B 949
ASP B 782
None
1.04A 4pcuA-5m5xB:
undetectable
4pcuA-5m5xB:
18.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4YOA_A_017A100_1
(HIV-1 PROTEASE)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
4 / 6 ASN B 755
THR B 692
PRO B 693
THR B 694
None
0.95A 4yoaA-5m5xB:
undetectable
4yoaA-5m5xB:
6.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5H3A_B_D16B401_1
(ORF70)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
5 / 7 ASP B 841
LEU B 845
GLY B 844
PHE B 825
TYR B 847
None
1.30A 5h3aB-5m5xB:
undetectable
5h3aB-5m5xB:
14.68
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5IFU_A_GBMA801_1
(PROLINE--TRNA LIGASE)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
5 / 12 TYR B 409
LEU B 413
ARG B 134
ILE B 457
GLY B 458
None
1.17A 5ifuA-5m5xB:
undetectable
5ifuA-5m5xB:
17.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5IFU_B_GBMB801_1
(PROLINE--TRNA LIGASE)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
6 / 9 ILE B 412
TYR B 409
LEU B 413
ARG B 134
ILE B 457
GLY B 458
None
1.25A 5ifuB-5m5xB:
undetectable
5ifuB-5m5xB:
17.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5IGW_A_CTYA404_1
(MACROLIDE
2'-PHOSPHOTRANSFERAS
E II)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
5 / 12 ILE B 104
GLY B 135
ILE B 412
TYR B 409
MET B 461
None
1.30A 5igwA-5m5xB:
undetectable
5igwA-5m5xB:
13.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5IWU_A_ACTA402_0
(MACROLIDE
2'-PHOSPHOTRANSFERAS
E II)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
4 / 6 VAL B1031
MET B 787
ILE B 947
ASP B 946
None
0.96A 5iwuA-5m5xB:
undetectable
5iwuA-5m5xB:
13.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5MLM_A_STRA401_1
(-)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
5 / 12 MET B1013
ILE B1026
VAL B 775
ILE B 776
PRO B 945
None
1.36A 5mlmA-5m5xB:
undetectable
5mlmA-5m5xB:
15.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5NOO_C_D16C402_1
(THYMIDYLATE SYNTHASE)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
5 / 6 ASP B 841
LEU B 845
GLY B 844
PHE B 825
TYR B 847
None
1.32A 5nooC-5m5xB:
undetectable
5nooC-5m5xB:
14.31
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5NOO_C_D16C402_1
(THYMIDYLATE SYNTHASE)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
5 / 6 TYR B 861
ASP B 841
LEU B 840
GLY B 844
TYR B 847
None
1.45A 5nooC-5m5xB:
undetectable
5nooC-5m5xB:
14.31
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5XV7_A_EMHA705_2
(SERINE-ARGININE (SR)
PROTEIN KINASE 1)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
4 / 4 VAL B 358
LEU B 359
LEU B 362
ASP B 369
None
1.45A 5xv7A-5m5xB:
undetectable
5xv7A-5m5xB:
6.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5Z84_P_CHDP305_0
(CYTOCHROME C OXIDASE
SUBUNIT 3
CYTOCHROME C OXIDASE
SUBUNIT 7A1,
MITOCHONDRIAL)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
4 / 6 GLN B 480
PHE B 464
LEU B 465
PHE B 194
None
1.05A 5z84P-5m5xB:
undetectable
5z84W-5m5xB:
undetectable
5z84P-5m5xB:
12.22
5z84W-5m5xB:
4.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5Z85_P_CHDP307_0
(CYTOCHROME C OXIDASE
SUBUNIT 3
CYTOCHROME C OXIDASE
SUBUNIT 7A1,
MITOCHONDRIAL)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
4 / 6 GLN B 480
PHE B 464
LEU B 465
PHE B 194
None
1.06A 5z85P-5m5xB:
undetectable
5z85W-5m5xB:
undetectable
5z85P-5m5xB:
12.22
5z85W-5m5xB:
4.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5Z86_P_CHDP307_0
(CYTOCHROME C OXIDASE
SUBUNIT 3
CYTOCHROME C OXIDASE
SUBUNIT 7A1,
MITOCHONDRIAL)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
4 / 6 GLN B 480
PHE B 464
LEU B 465
PHE B 194
None
1.04A 5z86P-5m5xB:
undetectable
5z86W-5m5xB:
undetectable
5z86P-5m5xB:
12.22
5z86W-5m5xB:
4.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ZCP_P_CHDP306_0
(CYTOCHROME C OXIDASE
SUBUNIT 3
CYTOCHROME C OXIDASE
SUBUNIT 7A1,
MITOCHONDRIAL)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
4 / 6 GLN B 480
PHE B 464
LEU B 465
PHE B 194
None
1.05A 5zcpP-5m5xB:
undetectable
5zcpW-5m5xB:
undetectable
5zcpP-5m5xB:
12.22
5zcpW-5m5xB:
4.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6NKN_W_CHDW102_0
(CYTOCHROME C OXIDASE
SUBUNIT 7A1,
MITOCHONDRIAL)
5m5x DNA-DIRECTED RNA
POLYMERASE I SUBUNIT
RPA135

(Saccharomyces
cerevisiae)
4 / 5 TYR B 742
ARG B1037
MET B 726
THR B 725
None
G  R  18 ( 4.6A)
None
None
1.31A 6nknW-5m5xB:
undetectable
6nknW-5m5xB:
4.38